celppreports.py

Output of celppreports.py --help

usage: celppreports.py [-h] [--outdir OUTDIR]
                       [--log {DEBUG,INFO,WARNING,ERROR,CRITICAL}] [--version]
                       celppdir

              Generates reports on CELPP processing pipeline.

              This will examine a directory containing outputs from
              CELPP processing pipeline and generate reports about
              those runs.

              At the moment only one report is generated, which summarizes
              candidates molecules that passed the blastnfilter stage.  The
              data is obtained by parsing the summary.txt file located
              within the stage.2.blastnfilter directory.

              This report is saved under --outdir path and is named
              blastnfilter.summary.csv

              This comma separated variable file contains Complexes,
              Dockable complexes, Dockable monomers, and Targets Found
              for each week found in the CELPP directory passed into this
              program.

              Example content of blastnfilter.summary.csv:

              Week #, Year, Complexes, Dockable complexes, Dockable monomers,
              Targets Found
              4,2016,178,95,71,67
              5,2016,120,80,60,30
              .
              .
              .

              

positional arguments:
  celppdir              Directory where celpp yearly runs reside

optional arguments:
  -h, --help            show this help message and exit
  --outdir OUTDIR       Directory to write output reports to
  --log {DEBUG,INFO,WARNING,ERROR,CRITICAL}
                        Set the logging level
  --version             show program's version number and exit