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@califano-lab

Califano Lab

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  1. ARACNe-AP ARACNe-AP Public

    Network Reverse Engineering through AP inference of Mutual Information

    Java 81 24

  2. PISCES PISCES Public

    R package for Protein activity analysis of single-cell RNAseq.

    R 80 24

  3. single-cell-pipeline single-cell-pipeline Public

    HTML 44 8

  4. OncoSig OncoSig Public

    Code to run OncoSig Analyses

    R 18 5

  5. NaRnEA NaRnEA Public

    NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)

    R 9 4

  6. MOMA MOMA Public

    R 6 3

Repositories

Showing 10 of 34 repositories
  • acdc_py_data Public
    califano-lab/acdc_py_data’s past year of commit activity
    0 0 0 0 Updated Jan 25, 2025
  • acdc_py Public

    scanpy-compatible suite for automated clustering of scRNA-seq data in python

    califano-lab/acdc_py’s past year of commit activity
    Jupyter Notebook 0 MIT 0 6 0 Updated Jan 20, 2025
  • ARACNe3 Public

    Faster & theoretically redesigned implementation of ARACNe

    califano-lab/ARACNe3’s past year of commit activity
    C++ 2 0 0 0 Updated Jan 16, 2025
  • VIPERKernel Public
    califano-lab/VIPERKernel’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 9, 2025
  • PISCES_networks Public

    Repository of networks from the PISCES project

    califano-lab/PISCES_networks’s past year of commit activity
    0 0 0 0 Updated Nov 12, 2024
  • Immune-Nets-Snakemake-Pipeline Public
    califano-lab/Immune-Nets-Snakemake-Pipeline’s past year of commit activity
    Python 0 0 0 0 Updated Oct 29, 2024
  • MAPK_Experimental_Signature Public

    This repository contains an example of code to generate a MAPK Experimental Signature from PlateSeq data

    califano-lab/MAPK_Experimental_Signature’s past year of commit activity
    R 0 0 0 0 Updated Aug 30, 2024
  • vespa.tutorial Public

    Tutorials on how to use the VESPA algorithm

    califano-lab/vespa.tutorial’s past year of commit activity
    R 0 0 0 0 Updated Mar 1, 2024
  • vespa.net Public

    VESPA (Virtual Enrichment-based Signaling Protein-activity Analysis) signaling network inference module

    califano-lab/vespa.net’s past year of commit activity
    Python 0 0 0 0 Updated Mar 1, 2024
  • vespa.db Public

    VESPA (Virtual Enrichment-based Signaling Protein-activity Analysis) supplementary data package

    califano-lab/vespa.db’s past year of commit activity
    R 0 0 0 0 Updated Mar 1, 2024
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