The scripts here can be used to run OncoSig analyses.
After downloading the files and installing them as a package go here to download the needed input files: https://figshare.com/articles/OncoSig_Input_Data/12315443
Unzip the files and use as directed in the vignette.
Conversion of these analyses to a Bioconductor R package is ongoing.
To install OncoSig from R/Rstudio first install the package devtools then enter the command devtools::install_github("califano-lab/OncoSig")