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Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml #124

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Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml #124

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143a648
pin numpy to 1.22.3 when using the Blazing Signature Filter and on Wi…
tnitka Apr 23, 2024
742d5cb
fix: pin hdbscan version. install snekmer directly from pip
christinehc May 8, 2024
5753988
add defaults::pyarrow to environment spec, ensuring pyarrow is instal…
tnitka Jun 5, 2024
9a5992a
pin hdbscan to 0.8.29 and scikit-learn to 1.2.2
tnitka Jun 5, 2024
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8 changes: 4 additions & 4 deletions environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,19 +7,19 @@ channels:
dependencies:
- python >= 3.9
- biopython
- pyarrow
- defaults::pyarrow
- jinja2
- matplotlib
- numpy == 1.22.3
- numba >= 0.56
- scipy
- pandas == 1.4.2
- seaborn
- scikit-learn
- scikit-learn == 1.2.2
- snakemake == 7.0
- tabulate == 0.8.10
- umap-learn
- hdbscan
- hdbscan == 0.8.29
- pip
- pip:
- -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer
- snekmer
10 changes: 5 additions & 5 deletions environment_BSF.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,20 +7,20 @@ channels:
dependencies:
- python >= 3.9
- biopython
- pyarrow
- defaults::pyarrow
- jinja2
- matplotlib
- numpy >= 1.22.3
- numpy == 1.22.3
- numba >= 0.56
- scipy
- pandas
- seaborn
- scikit-learn
- scikit-learn == 1.2.2
- snakemake == 7.0
- tabulate == 0.8.10
- umap-learn
- hdbscan
- hdbscan == 0.8.29
- pip
- pip:
- -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer
- snekmer
- -e git+https://github.com/PNNL-Compbio/bsf-jaccard-py#egg=bsf
10 changes: 5 additions & 5 deletions environment_Windows.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,19 +7,19 @@ channels:
dependencies:
- python >= 3.9
- biopython
- pyarrow
- defaults::pyarrow
- jinja2
- matplotlib
- numpy >= 1.22.3
- numpy == 1.22.3
- numba >= 0.56
- scipy
- pandas
- seaborn
- scikit-learn
- scikit-learn == 1.2.2
- snakemake-minimal == 7.0
- tabulate == 0.8.10
- umap-learn
- hdbscan
- hdbscan == 0.8.29
- pip
- pip:
- -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer
- snekmer
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