Skip to content

Issues: PNNL-CompBio/Snekmer

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

26 Open 53 Closed
26 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Develop Threshold Methods for Learn/Apply using Decoy Data enhancement New feature or request
#126 opened Oct 2, 2024 by jjacobson95
Issues installing on Windows 11
#125 opened Jun 6, 2024 by wichne
7
Apply fails with single input file
#123 opened Mar 20, 2024 by tnitka
1
@jjacobson95
2
Update Learn / Apply annotation file format enhancement New feature or request
#122 opened Mar 12, 2024 by jjacobson95
@jjacobson95
Increasing min_rep doesn't reduce cluster memory usage
#121 opened Feb 23, 2024 by tnitka
Add Dockerfile generation to Continuous Integration
#120 opened Jan 24, 2024 by jjacobson95
LA tutorial issues
#117 opened Dec 6, 2023 by biodataganache
@jjacobson95
1
Update Learn Apply Output
#114 opened Aug 3, 2023 by jjacobson95
Update snekmer workflow graphic
#113 opened Aug 1, 2023 by biodataganache
@christinehc
Update main readme
#112 opened Aug 1, 2023 by biodataganache
Specifying input directory causes PeriodicWildcardError
#110 opened May 30, 2023 by tnitka
2
M1 issues
#102 opened Dec 19, 2022 by christinehc
Model packaging enhancement New feature or request
#89 opened Oct 6, 2022 by biodataganache
@biodataganache @christinehc @jjacobson95
1
Min_filter impact on modeling results
#88 opened Sep 28, 2022 by biodataganache
@biodataganache
min_filter as percentage enhancement New feature or request
#87 opened Sep 28, 2022 by biodataganache
1
@biodataganache
Inconsistencies arising from input_file_regex
#82 opened Sep 16, 2022 by wichne
Pull kmer length and recoding alphabet from model in search mode
#80 opened Sep 8, 2022 by wichne
@christinehc
Background distribution handling enhancement New feature or request
#74 opened Aug 28, 2022 by biodataganache
@biodataganache @christinehc
1
windows- zipped files not detected/unzipped yet bug Something isn't working HighPriority Something that needs to be done soon
#60 opened Aug 10, 2022 by abbyjerger
1
@christinehc
6
Background file issue bug Something isn't working
#37 opened Dec 16, 2021 by biodataganache Snekmer Paper Final Draft
1
@christinehc
2
One input fasta class bug bug Something isn't working enhancement New feature or request
#34 opened Dec 16, 2021 by biodataganache
@christinehc
2
Dimensionality reduction for large clustering datasets enhancement New feature or request
#32 opened Dec 16, 2021 by biodataganache
@christinehc
Bootstrap model building enhancement New feature or request
#31 opened Dec 16, 2021 by biodataganache
@wichne @biodataganache @christinehc
Conda install enhancement New feature or request
#22 opened Nov 16, 2021 by christinehc
@christinehc
Fix modeling/scoring to handle single-sequence input files bug Something isn't working
#13 opened Sep 9, 2021 by christinehc
@christinehc
1
ProTip! What’s not been updated in a month: updated:<2024-10-16.