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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

test download location
#590 opened Jan 11, 2025 by pstjohn Loading…
11 tasks
Add support for marking and skipping slow tests, temporarily mark pydantic tests as slow
#589 opened Jan 10, 2025 by pstjohn Loading…
1 of 11 tasks
3
fix image links in esm2 model card SKIP_CI Completely skips the CI pipeline
#584 opened Jan 8, 2025 by pstjohn Loading…
2 of 11 tasks
v25.01
2
Add extra echoes during docker build in CI
#583 opened Jan 8, 2025 by trvachov Loading…
2 of 11 tasks
5
Release of v1.0 of BioNeMo Modular Co-Design (MoCo)
#575 opened Jan 6, 2025 by nvdreidenbach Loading…
@nvdreidenbach
2
ESM2 Finetuning refactor
#574 opened Jan 6, 2025 by farhadrgh Loading…
1 of 11 tasks
2
add weight decay
#564 opened Jan 1, 2025 by sichu2023 Loading…
2
add generic torchmetric ppl logging on esm2
#557 opened Dec 28, 2024 by sichu2023 • Draft
@sichu2023
Duplicates of Peter's changes for CI
#556 opened Dec 25, 2024 by trvachov Loading…
6
Initial attempt for ESM-2 to NeMo checkpoint conversion
#537 opened Dec 16, 2024 by pstjohn • Draft
[DO NOT REVIEW AS A PR] little example of how we might use nemo-run for handling SLURM
#536 opened Dec 16, 2024 by skothenhill-nv Loading…
add spawn cuda process testing
#535 opened Dec 16, 2024 by sichu2023 • Draft
2
Implement megatron-aware perplexity in torchmetrics
#525 opened Dec 12, 2024 by sichu2023 Loading…
@sichu2023
15
Remove outdated note on very large datasets in MultiEpochDataset SKIP_CI Completely skips the CI pipeline
#521 opened Dec 11, 2024 by pstjohn Loading… v25.01
Re-opens Conda-Based Compatibility Test Images
#518 opened Dec 9, 2024 by skothenhill-nv Loading…
@malcolmgreaves
2
wip - Mg/pytorch source builds
#506 opened Dec 6, 2024 by malcolmgreaves • Draft
5 tasks
[Draft] Unify inference interface - request for comments
#505 opened Dec 6, 2024 by skothenhill-nv Loading…
7
single Numpy array option
#503 opened Dec 5, 2024 by polinabinder1 • Draft
7
Set up our pytest suite for the codecov integration
#502 opened Dec 5, 2024 by pstjohn Loading…
10
Savitha/new profiling experiments
#500 opened Dec 4, 2024 by savitha-eng • Draft
5 tasks
1
pytest in CI: changing source of data download to ngc (bionemo2) INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#498 opened Dec 4, 2024 by dorotat-nv Loading…
@dorotat-nv
2
Refactor bucket batch sampler to support DDP sampling
#478 opened Nov 26, 2024 by guoqing-zhou • Draft
5 tasks
20
Polinabinder/file extend
#477 opened Nov 26, 2024 by polinabinder1 Loading…
26
Add a utility function for extending a file with the content of another file. SKIP_CI Completely skips the CI pipeline
#471 opened Nov 23, 2024 by edawson Loading…
debugging checkpoint resumption
#469 opened Nov 22, 2024 by pstjohn • Draft
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