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21 Open 344 Closed
21 Open 344 Closed
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Issues list

[BUG] Error in h5ad conversion with Singularity(?) bug Something isn't working
#789 opened Oct 21, 2024 by jashapiro
2
Consider using nf-schema plugin to validate inputs
#758 opened May 6, 2024 by jashapiro
project_celltype_metafile parameter is missing from scpca-nf schema
#741 opened Apr 16, 2024 by sjspielman
Future idea: Create merged objects for projects with multiplexed libraries containing all non-multiplexed single-cell libraries
#718 opened Mar 6, 2024 by allyhawkins
Include instructions for specifying merge_run_ids when merging projects in external instructions nice to have
#715 opened Mar 6, 2024 by allyhawkins
Add troubleshooting section to external instructions
#690 opened Feb 6, 2024 by sjspielman
3
Check for missing bulk in genetic demux
#674 opened Jan 25, 2024 by jashapiro
@jashapiro
Update merged report UMAP sizing QC Relevant to the HTML QC report made available to users
#641 opened Jan 2, 2024 by sjspielman
2
Use submitter ontology labels, if provided
#559 opened Nov 13, 2023 by sjspielman
Harmonize different types of submitter unknown labels QC Relevant to the HTML QC report made available to users
#558 opened Nov 13, 2023 by sjspielman
Support converting to AnnData objects with multiplexed libraries
#424 opened Aug 29, 2023 by allyhawkins
1
Update QC report tables nice to have QC Relevant to the HTML QC report made available to users
#371 opened Jul 6, 2023 by sjspielman
4
Expand documentation on contents of repository
#285 opened Mar 6, 2023 by sjspielman
1
Future issue: Modify integration workflow to incorporate additional covariates for harmony
#278 opened Feb 13, 2023 by allyhawkins
Include parameter for specifying integration order in integration workflow
#275 opened Feb 13, 2023 by allyhawkins
1
Test script for downloading reference files and containers
#234 opened Nov 11, 2022 by allyhawkins
[BUG] missing rad files? bug Something isn't working
#213 opened Sep 12, 2022 by jashapiro
Check metadata fields as part of the workflow
#127 opened Mar 11, 2022 by jashapiro
Add sample count checks to genetic demultiplexing
#100 opened Feb 14, 2022 by jashapiro
Improve aesthetics of QC report QC Relevant to the HTML QC report made available to users
#507 opened Oct 6, 2021 by jashapiro
1
Implement fenced divs to make a two-column html output. QC Relevant to the HTML QC report made available to users
#508 opened Sep 27, 2021 by jashapiro
3
ProTip! Updated in the last three days: updated:>2024-11-02.