Use submitter ontology labels, if provided

[sjspielman]

Currently, our script to add submitter annotations only reads in the cell type labels provided by submitters, but they do have the optional choice to also include ontologies. We will need to account for this and get any ontology labels also into SCE.

Note these TODO spots:

scpca-nf/bin/add_submitter_annotations.R

Lines 54 to 58 in 4983ecd

	# Check columns before proceeding for faster failing:
	# TODO: WHAT IF THEY PROVIDE AN ONTOLOGY COLUMN? WE NEED TO PARSE THAT TOO. WILL NEED MORE IF BELOW.
	if (!all(c("cell_barcode", "cell_type_assignment") %in% names(submitter_df))) {
	stop("The submitter TSV file must contain columns `cell_barcode` and `cell_type_assignment`.")
	}

scpca-nf/bin/add_submitter_annotations.R

Lines 67 to 72 in 4983ecd

	# keep columns of interest
	# TODO: WE NEED TO ALLOW FOR AN ONTOLOGY COLUMN
	dplyr::select(
	barcodes = cell_barcode,
	submitter_celltype_annotation = cell_type_assignment
	) |>

---

Noting this does not block #544 and the associated release.