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27 Open 36 Closed
27 Open 36 Closed
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Issues list

Using VarTrix on long-read single cell sequencing data
#127 opened Oct 15, 2024 by haghani-sara
1
duplicate snp names
#126 opened Sep 26, 2024 by lindsdudley
installation issue
#125 opened Aug 11, 2024 by nbahlis
3
Help find problematic file with error 'Failed to seek to offset'
#124 opened Aug 2, 2024 by richelbilderbeek
Low coverage at exon boundaries and question about 10X 5' scRNA-seq data
#123 opened Jun 7, 2024 by HenriettaHolze
one-off error in error message "has invalid alternative characters"
#122 opened Jun 7, 2024 by HenriettaHolze
3
What's the use of VCF file?
#113 opened Aug 31, 2023 by FionaMoon
vartrix drops barcodes
#82 opened Jul 6, 2023 by Cathy94
Unequal number of reference reads
#73 opened May 12, 2022 by grasshoffm
4
Coverage of reads when using umi mode
#71 opened Apr 20, 2022 by korakusa
1
Support bgzip fasta file
#69 opened Feb 14, 2022 by timoast
Out of Memory Error for MT library
#68 opened Feb 4, 2022 by grasshoffm
error of vcf format
#67 opened Jan 13, 2022 by songeric1107
1
VarTrix calls reference reads in a cell line that does not contained reference reads
#64 opened Sep 13, 2021 by dcruz5h
What does consensus value equals to 2 mean?
#63 opened Aug 25, 2021 by mzhang0215
Calling the same physical positions between sequencing runs
#60 opened Jun 15, 2021 by gertzem
3
vartrix drops barcodes so that output files can no longer be linked to the original barcodes
#59 opened Apr 30, 2021 by ejvandenoord
2
No alt reads for called SNPs
#58 opened Mar 22, 2021 by grasshoffm
Best strategy for non-coding variants
#57 opened Feb 26, 2021 by RegnerM2015
Error in VCF format ?
#53 opened Oct 26, 2020 by atourneu
3
Error in VCF format?
#46 opened May 17, 2020 by xiweiwu
1
discrepancy between alt_frac and coverage methods
#43 opened Apr 2, 2020 by igordot
1
output matrix alt_frac mode NaNs
#41 opened Mar 27, 2020 by igordot
Any manuscript to further elaborate on how vartrix works in details?
#30 opened Sep 3, 2019 by Puriney
option for no smith-waterman in the case of only looking at snps and speed issues with many 0 depth loci
#28 opened Aug 3, 2019 by wheaton5
7
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