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I have generated VCF file using VarScan2. However, it seems that VarTrix does not detect any variants in the vcf file. Is there an example VCF file that I can look at to make sure my VCF format is correct?
[E::vcf_hdr_read] No sample line
22:19:44 [ERROR] Warning! Zero variants found in input VCF. Output matrices will be by definition empty but will still be generated.
22:19:44 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
The text was updated successfully, but these errors were encountered:
I have generated VCF file using VarScan2. However, it seems that VarTrix does not detect any variants in the vcf file. Is there an example VCF file that I can look at to make sure my VCF format is correct?
[E::vcf_hdr_read] No sample line
22:19:44 [ERROR] Warning! Zero variants found in input VCF. Output matrices will be by definition empty but will still be generated.
22:19:44 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
The text was updated successfully, but these errors were encountered: