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Support bgzip fasta file #69

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timoast opened this issue Feb 14, 2022 · 0 comments
Open

Support bgzip fasta file #69

timoast opened this issue Feb 14, 2022 · 0 comments

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@timoast
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timoast commented Feb 14, 2022

Hi,

Thanks for the great tool! I ran into an issue recently when trying to use a bgzip-compressed genome FASTA file as input, the program would crash every time. Looking at the crash report pointed me to lines in the FASTA reader and I eventually worked out that the FASTA needs to be decompressed for it to work.

Would it be possible to support bgzipped FASTA, or if not maybe add a check to make sure the FASTA file is not compressed?

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