Kokkos + KokkosKernels Promotion To 4.3.0 #12879

ndellingwood · 2024-04-02T01:03:31Z

@trilinos/kokkos @trilinos/kokkos-kernels

Motivation

Snapshot Kokkos Ecosystem 4.3.0 to Trilinos

Testing

Various nightly testing jobs of release candidate, AT pre-test with #12863; AT

ndellingwood · 2024-04-02T01:05:40Z

The majority of the changes were pre-tested by the AT in #12863
In that round of testing, the ROL_example_PDE-OPT_navier-stokes_example_01_MPI_4 test timed out in the clang/11 build; if that recurs here, it may indicate candidacy to be marked with SET_RUN_SERIAL to test if that resolves potential issue

trilinos-autotester · 2024-04-02T03:24:23Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2024-04-02T03:26:25Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

trilinos-autotester · 2024-04-02T05:53:06Z

Status Flag 'Pull Request AutoTester' - Error: Jenkins Jobs - Error: [Jenkins] Cannot retrieve build running status on build (FATAL: ERROR : [jwrap: job_instance.get_build(self.bn):105:/home/trilinos/workspace/Trilinos_autotester_driver_inst_1/autotester/support/jenkins_support.py] - General Exception: (502 Server Error: Proxy Error for url: https://do.sandia.gov/trilinos-ci/job/Trilinos_PR_gcc-8.3.0-serial/2397/api/python?depth=1))

trilinos-autotester · 2024-04-02T06:01:37Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 12879.

Wiki: How to Reproduce PR Testing Builds and Errors.

ndellingwood · 2024-04-02T18:03:01Z

I scanned the compilation errors and looked back at the code changes, I found a couple artifacts that showed up following the merge-to-master before snapshot (unrelated to merge conflicts). I'll fix these in their respective repo PRs and update the snapshots to this PR

ndellingwood · 2024-04-02T19:25:33Z

Merge artifacts fixed in the release PRs kokkos/kokkos#6908 and kokkos/kokkos-kernels#2163, and snapshots updated here

trilinos-autotester · 2024-04-02T19:42:31Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2024-04-02T19:44:27Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

trilinos-autotester · 2024-04-03T00:23:19Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 12879.

Wiki: How to Reproduce PR Testing Builds and Errors.

ndellingwood · 2024-04-03T03:25:14Z

CDash failure summary:

The clang/11 job https://trilinos-cdash.sandia.gov/viewBuildError.php?buildid=1454586 failed with reports of:

 ccache: error: Failed to create directory /fgs/trilinos/ccache/cache/a/c: Stale file handle

@sebrowne @trilinos/framework is there a label available to clean the ccache? If not, can you give guidance?

The intel/2021.3 and gnu/8.3.0 jobs reported two panzer test failures:

PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-2

...
Belos::PseudoBlockGmresSolMgr::solve(): Warning! NaN has been detected!
terminate called after throwing an instance of 'std::logic_error'
  what():  ../Trilinos/packages/panzer/adapters-stk/example/MixedPoissonExample/main.cpp:632:

Throw number = 2

Throw test that evaluated to true: !(false)

Error!

PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-3

...
Belos::PseudoBlockGmresSolMgr::solve(): Warning! NaN has been detected!
terminate called after throwing an instance of 'terminate called after throwing an instance of 'std::logic_error'
std::logic_error'
  what():  ../Trilinos/packages/panzer/adapters-stk/example/MixedPoissonExample/main.cpp:632:

Throw number = 2

Throw test that evaluated to true: !(false)

Error!  what():  ../Trilinos/packages/panzer/adapters-stk/example/MixedPoissonExample/main.cpp:632:

Throw number = 2

Throw test that evaluated to true: !(false)

Error!

I didn't see those failures with with the test PR #12863 , this is a list of the changes since that PR:

Kokkos: previous test PR sha: kokkos/kokkos@772e745
Updates since previous test:

[4.3.00] Cuda: Fix configuring with CMake 3.28.4 kokkos/kokkos#6903 (Cuda: Fix configuring with CMake 3.28.4)
[ci skip] Update changelog kokkos/kokkos#6886 (changelog)

KokkosKernels: previous test PR sha kokkos/kokkos-kernels@f909de6
Updates since previous test:

KokkosBlas1_axpby.hpp: change debug macro guard for printInformation kokkos/kokkos-kernels#2157 (macro update in KokkosBlas1_axpby.hpp to resolve MueLu test failures)
Update changelog for 4.3.00 kokkos/kokkos-kernels#2148 (changelog)

The panzer test has some noisy output, maybe the change in kokkos/kokkos-kernels#2157 was sufficient to silence the issues in the MueLu tests but introduced some unexpected extra output in the panzer tests? Launching a build to check

ndellingwood · 2024-04-03T17:10:17Z

After some running manual builds and sanity testing, it looks like a Trilinos change between submission of #12863 on (Mar 26) and submission+testing of this PR (Apr 2) is triggering the failure of the Panzer tests

I (re)confirmed that the Panzer examples (PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-2 and PanzerAdaptersSTK_MixedPoissonExample-ConvTest-Hex-Order-3) pass with the 4.3 release candidate branches when testing 70242e0 (Mar 25, merge of PR Panzer MiniEM: Make truncating MueLu hierarchies optional #12858); this was a sanity check, as the tests passed in the prior test PR Kokkos + KokkosKernels Promotion To 4.3.0 (Test) #12863
Those Panzer examples fail with 4.3 release candidate branches and 6c485b0 (Mar 29, merge of PR Seacas snapshot 2024 03 27 #12870)

Next I'm going to bisect on merged PRs between the two referenced above, skipping the AT/CI related merges. This is the list of PRs I'm checking, merged between #12858 and #12870:

#12868 - skip, CI
#12866
#12864
#12800 - skip, CI
#12859 - skip codeql
#12852

ndellingwood · 2024-04-03T18:34:03Z

I bisected the failures to changes merged with #12852

I retested with changing the guarded KOKKOSKERNELS_VERSION from 40299 to 40399 and the failing Panzer examples passed - @brian-kelley @lucbv what are your thoughts on changing the version checked to 40399, is this a reasonable thing to do? If not, can give some suggestions or guidance on what changes may be needed?

I attached a diff of what I tested for clarity:

tpetra-kver-patch.txt

brian-kelley · 2024-04-03T18:54:28Z

@ndellingwood I'm trying to replicate and then debug this now.

Changing the KK version threshold to 40399 is basically equivalent to reverting #12852 right? Do the panzer tests pass with KK develop which has version=40399 now? If not I would say just change
#if KOKKOSKERNELS_VERSION >= 40299 to #if 0 to get the release out, and then I'll submit a new PR later to re-enable those paths.

ndellingwood · 2024-04-03T18:57:03Z

Thanks for the response @brian-kelley , I'll share a reproducer configuration with you (slight modification to the genconfig fragments posted in cdash)

Changing the KK version threshold to 40399 is basically equivalent to reverting #12852 right?

yeah, basically :(

Do the panzer tests pass with KK develop which has version=40399 now?

Build is almost complete, I'll let you know shortly

brian-kelley · 2024-04-03T19:05:09Z

@ndellingwood I would be surprised if KK develop fixes this - I just looked at a diff between develop and the release candidate, and the changes should have no effect unless a) multiple streams are used with a single spmv handle, or b) rocsparse and BSR matrices are used together. But obviously those aren't in play here because the build is serial backend.

ndellingwood · 2024-04-03T19:14:42Z

@brian-kelley you're right, my build just finished with the develop branch and the tests still fail there like expected

…d89c0d From repository at [email protected]:kokkos/kokkos.git At commit: commit 47a50ac3ca9c93746fa6c23629d9fe55ecd89c0d Author: Nathan Ellingwood <[email protected]> Date: Mon Apr 1 18:21:56 2024 -0600 Update master_history.txt for 4.3.0

…e042aa36ef3020 From repository at [email protected]:kokkos/kokkos-kernels.git At commit: commit d8e2b21ce71363e689eaa81fc8e042aa36ef3020 Author: Nathan Ellingwood <[email protected]> Date: Mon Apr 1 18:22:20 2024 -0600 Update master_history.txt for 4.3.0

- resolves failures in panzer tests detected during testing of #12879 Co-authored-by: brian-kelley <[email protected]>

ndellingwood · 2024-04-03T23:53:37Z

Kokkos and KokkosKernels snapshots have been updated, @brian-kelley provided a patch to resolve the panzer example failures (sha d21345a) , ready for retest

trilinos-autotester · 2024-04-04T00:14:01Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2024-04-04T00:15:56Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

trilinos-autotester · 2024-04-04T04:16:31Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

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CDash Test Results for PR# 12879.

Wiki: How to Reproduce PR Testing Builds and Errors.

rppawlo · 2024-04-04T12:34:47Z

@brian-kelley - Thanks for getting this fixed! Could you comment on what you had to do to get the panzer tests passing? Just wondering if there is something we should look at from the panzer side for future kokkos releases.

brian-kelley · 2024-04-04T15:01:03Z

@rppawlo The output vector y to a CrsMatrix::apply contained NaNs on input. When beta=0, y is supposed to get completely overwritten with zero before alphaAx is computed. If it's just multiplied by beta (which is what was happening in the merge path implementation), 0*NaN is still NaN. So the output vector contained NaNs when it shouldn't and the Belos solver immediately failed.

It's not a Panzer issue though. We do support this beta=0 case in KokkosKernels/Tpetra, we just have to test it better in KokkosKernels: kokkos/kokkos-kernels#2166

On the other hand, I'm not sure where these NaNs were coming from originally, but getting rid of them would have also fixed these tests

rppawlo · 2024-04-04T15:27:41Z

Thanks @brian-kelley ! The nans are most likely from panzer - added specifically to catch just this type of error. See the comments on the far right in the code block below:

disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , alpha(Teuchos::ScalarTraits<double>::nan())   // also setup some painful and
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , beta(Teuchos::ScalarTraits<double>::nan())    // hopefully loud initial values
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , time(Teuchos::ScalarTraits<double>::nan())
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , step_size(Teuchos::ScalarTraits<double>::nan())
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , alpha(Teuchos::ScalarTraits<double>::nan())   // also setup some painful and
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , beta(Teuchos::ScalarTraits<double>::nan())    // hopefully loud initial values
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , time(Teuchos::ScalarTraits<double>::nan())
disc-fe/src/Panzer_AssemblyEngine_InArgs.hpp:       , step_size(Teuchos::ScalarTraits<double>::nan())

ndellingwood · 2024-04-04T15:31:08Z

CDash summary:

Two jobs failed at compilation (Trilinos_PR_gcc-8.3.0, Trilinos_PR_gcc-8.3.0-debug), looks like changes in sha d21345a left a potentially unused maxRowImbalance variable triggering -Werror in various places:

../Trilinos/packages/tpetra/core/src/Tpetra_CrsMatrix_def.hpp:5089:18: error: variable ‘maxRowImbalance’ set but not used [-Werror=unused-but-set-variable]
     LocalOrdinal maxRowImbalance = 0;

I'm guessing the variable just needs to be moved to a guarded region, taking a look now

ndellingwood · 2024-04-04T15:34:46Z

Just pushed b1a4376 which should resolve the -Werror

trilinos-autotester · 2024-04-04T15:49:29Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2024-04-04T15:51:35Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Build Num: 3925
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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: ndellingwood

trilinos-autotester · 2024-04-04T19:09:01Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

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PR_LABELS	pkg: Kokkos;pkg: KokkosKernels
PULLREQUESTNUM	12879
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	ascic
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`b1a4376`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`34297d5`

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 3416
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	pkg: Kokkos;pkg: KokkosKernels
PULLREQUESTNUM	12879
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	GPU
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`b1a4376`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`34297d5`

Build Information

Test Name: Trilinos_PR_intel-2021.3

Build Num: 2055
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-intel-2021.3-sems-openmpi-4.0.5_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-off_no-package-enables
PR_LABELS	pkg: Kokkos;pkg: KokkosKernels
PULLREQUESTNUM	12879
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	trilinos-any
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`b1a4376`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`34297d5`

Build Information

Test Name: Trilinos_PR_cuda-11.4.20-uvm

Build Num: 158
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS	pkg: Kokkos;pkg: KokkosKernels
PULLREQUESTNUM	12879
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	trilinos-any
TRILINOS_SOURCE_REPO	https://github.com/trilinos/Trilinos
TRILINOS_SOURCE_SHA	`b1a4376`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`34297d5`

CDash Test Results for PR# 12879.

trilinos-autotester · 2024-04-04T19:09:18Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
NO REVIEWS HAVE BEEN PERFORMED ON THIS PULL REQUEST!

trilinos-autotester · 2024-04-04T19:09:24Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

ndellingwood · 2024-04-04T19:39:37Z

@crtrott @lucbv this PR is ready for review/approval

trilinos-autotester · 2024-04-04T20:39:31Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ lucbv ]!

trilinos-autotester · 2024-04-04T20:39:38Z

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

ndellingwood added pkg: Kokkos pkg: KokkosKernels labels Apr 2, 2024

ndellingwood requested review from crtrott, srajama1 and lucbv April 2, 2024 01:03

ndellingwood requested review from a team as code owners April 2, 2024 01:03

This was referenced Apr 2, 2024

Master release 4.3.00 kokkos/kokkos#6908

Merged

Master release 4.3.00 kokkos/kokkos-kernels#2163

Merged

ndellingwood force-pushed the kokkos-promotion branch from 8102a90 to f0b952d Compare April 2, 2024 19:23

ndellingwood added the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Apr 3, 2024

ndellingwood added 2 commits April 3, 2024 16:17

tpetra: update Tpetra_SUPPORTED_KOKKOS_VERSION to 4.3.0

a0dec6e

ndellingwood force-pushed the kokkos-promotion branch from f0b952d to a0dec6e Compare April 3, 2024 22:18

tpetra: always call the default spmv algo

d21345a

- resolves failures in panzer tests detected during testing of #12879 Co-authored-by: brian-kelley <[email protected]>

ndellingwood removed the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Apr 3, 2024

tpetra: move variables to guarded region, resolving -Werror

b1a4376

lucbv approved these changes Apr 4, 2024

View reviewed changes

dalg24 approved these changes Apr 4, 2024

View reviewed changes

ndellingwood merged commit 989c150 into develop Apr 4, 2024
11 of 13 checks passed

ndellingwood deleted the kokkos-promotion branch April 4, 2024 23:42

Kokkos + KokkosKernels Promotion To 4.3.0 #12879

Kokkos + KokkosKernels Promotion To 4.3.0 #12879

Conversation

ndellingwood commented Apr 2, 2024

Motivation

Testing

ndellingwood commented Apr 2, 2024

trilinos-autotester commented Apr 2, 2024

trilinos-autotester commented Apr 2, 2024

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_clang-11.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_python3

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_intel-2021.3

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_cuda-11.4.20-uvm

Jenkins Parameters

Using Repos:

trilinos-autotester commented Apr 2, 2024

trilinos-autotester commented Apr 2, 2024

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_clang-11.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_python3

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_intel-2021.3

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_cuda-11.4.20-uvm

Jenkins Parameters

ndellingwood commented Apr 2, 2024

ndellingwood commented Apr 2, 2024

trilinos-autotester commented Apr 2, 2024

trilinos-autotester commented Apr 2, 2024

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_clang-11.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_python3

Jenkins Parameters

Build Information

ndellingwood commented Apr 3, 2024 •

edited

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