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merge of batchtools into the development repository. #829

Merged

Commits on Mar 17, 2024

  1. batch tools subpackage

    jchen6727 committed Mar 17, 2024
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Commits on Mar 18, 2024

  1. comm update

    jchen6727 committed Mar 18, 2024
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Commits on Mar 19, 2024

  1. new search methods

    jchen6727 committed Mar 19, 2024
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  2. fixed import issues

    jchen6727 committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. updates comm, search

    jchen6727 committed Mar 20, 2024
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Commits on Mar 21, 2024

  1. search.py

    jchen6727 committed Mar 21, 2024
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Commits on Mar 27, 2024

  1. wrapper tools search

    jchen6727 committed Mar 27, 2024
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Commits on Mar 30, 2024

  1. update to batchtools

    jchen6727 committed Mar 30, 2024
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Commits on Apr 4, 2024

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Commits on Apr 8, 2024

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Commits on Apr 16, 2024

  1. update to search (kwargs)

    jchen6727 committed Apr 16, 2024
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Commits on Apr 18, 2024

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Commits on Apr 25, 2024

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  2. update the submit (zsh->sh)

    jchen6727 committed Apr 25, 2024
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Commits on Apr 28, 2024

  1. update batchtools, submits

    jchen6727 committed Apr 28, 2024
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Commits on Apr 30, 2024

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Commits on May 7, 2024

  1. batchtools documentation

    jchen6727 committed May 7, 2024
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Commits on May 8, 2024

  1. minor updates- search

    jchen6727 committed May 8, 2024
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Commits on May 9, 2024

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Commits on May 11, 2024

  1. update CHANGES.md

    jchen6727 committed May 11, 2024
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Commits on May 13, 2024

  1. Batch (suny-downstate-medical-center#818)

    * batch tools subpackage
    
    * comm update
    
    * new search methods
    
    * fixed import issues
    
    * updates comm, search
    
    * search.py
    
    * wrapper tools search
    
    * update to batchtools
    
    * codebase moved to netpyne batchtools
    
    https://github.com/jchen6727/netpyne/tree/batch
    
    * update to comm.py, runners.py
    
    * update to search (kwargs)
    
    * config update (should delete two keys @ end?)
    
    * replace pubtk with batchtk for compatibility with pip
    
    * update the submit (zsh->sh)
    
    * update batchtools, submits
    
    * fixed socket functionality for submits.py
    
    * batchtools documentation
    
    * minor updates- search
    jchen6727 authored May 13, 2024
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Commits on May 14, 2024

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  4. sort init.py

    jchen6727 committed May 14, 2024
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  6. updating user documentation

    jchen6727 committed May 14, 2024
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Commits on May 16, 2024

  1. Updated logic, bug fix

    cfg.progressBar = 2 will display all progress bars
    cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0
    cfg.progressBar = 0 will disable the progress bar.
    jchen6727 committed May 16, 2024
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  4. Batch update (suny-downstate-medical-center#822)

    * update per deployment on HPC
    jchen6727 authored May 16, 2024
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Commits on May 31, 2024

  1. I love git

    Jsprouse0 committed May 31, 2024
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Commits on Jun 3, 2024

  1. updated makedirs

    jchen6727 committed Jun 3, 2024
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Commits on Jul 2, 2024

  1. fixed typo

    'sge' or 'sh' are valid options for the 'job_type' argument, not 'shell'
    jchen6727 committed Jul 2, 2024
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Commits on Jul 7, 2024

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Commits on Jul 15, 2024

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Commits on Jul 16, 2024

  1. updated .rst documentation

    jchen6727 committed Jul 16, 2024
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  3. updates to batchtools to allow 'cfg' initialization with supplied dic…

    …tionary, fanova example started. batchtools.rst updated
    jchen6727 committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. fixed save.py

    jchen6727 committed Jul 17, 2024
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  3. Batch (suny-downstate-medical-center#826)

    update batch re: end user suggestion
    
    can now initialize cfg with a dictionary:
    ``` Python
    from netpyne.batchtools import specs
    cfg = specs.SimConfig({'x': [None] * 4})
    ```
    
    creates a new cfg such that it already has value x, e.g.
    cfg.x = [None, None, None, None]
    
    update to documentation with some minimal working examples (see https://github.com/suny-downstate-medical-center/netpyne/tree/batch/netpyne/batchtools/examples), esp. Rosenbrock w/ coupled parameters, nested parameters, etc.
    jchen6727 authored Jul 17, 2024
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Commits on Jul 23, 2024

  1. updates to batchtools

    fanova (large sample -- 625), running fanova analysis
    cfg.py of CA3 including additional cfg settings to avoid confusion
    jchen6727 committed Jul 23, 2024
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Commits on Jul 30, 2024

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Commits on Aug 1, 2024

  1. fanova example

    jchen6727 committed Aug 1, 2024
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  2. updated user documentation

    jchen6727 committed Aug 1, 2024
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Commits on Aug 14, 2024

  1. update documentation (.rst)

    jchen6727 committed Aug 14, 2024
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Commits on Aug 23, 2024

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Commits on Aug 25, 2024

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Commits on Aug 26, 2024

  1. testing mapping

    jchen6727 committed Aug 26, 2024
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  2. test_case

    jchen6727 committed Aug 26, 2024
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  4. update runners, test_map.py

    jchen6727 committed Aug 26, 2024
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Commits on Aug 27, 2024

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Commits on Aug 30, 2024

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