merge of batchtools into the development repository. #829
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* batch tools subpackage * comm update * new search methods * fixed import issues * updates comm, search * search.py * wrapper tools search * update to batchtools * codebase moved to netpyne batchtools https://github.com/jchen6727/netpyne/tree/batch * update to comm.py, runners.py * update to search (kwargs) * config update (should delete two keys @ end?) * replace pubtk with batchtk for compatibility with pip * update the submit (zsh->sh) * update batchtools, submits * fixed socket functionality for submits.py * batchtools documentation * minor updates- search
cfg.progressBar = 2 will display all progress bars cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0 cfg.progressBar = 0 will disable the progress bar.
…to development
'sge' or 'sh' are valid options for the 'job_type' argument, not 'shell'
…tionary, fanova example started. batchtools.rst updated
update batch re: end user suggestion
can now initialize cfg with a dictionary:
``` Python
from netpyne.batchtools import specs
cfg = specs.SimConfig({'x': [None] * 4})
```
creates a new cfg such that it already has value x, e.g.
cfg.x = [None, None, None, None]
update to documentation with some minimal working examples (see https://github.com/suny-downstate-medical-center/netpyne/tree/batch/netpyne/batchtools/examples), esp. Rosenbrock w/ coupled parameters, nested parameters, etc.
fanova (large sample -- 625), running fanova analysis cfg.py of CA3 including additional cfg settings to avoid confusion
jchen6727
merged commit 91d8837
into
suny-downstate-medical-center:development
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updates to batch (
netpyne.batchtools) merged into netpyne dev branch.