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Copasi javascript support #2015

Merged
merged 36 commits into from
Oct 18, 2024
Merged

Copasi javascript support #2015

merged 36 commits into from
Oct 18, 2024

Commits on Jun 18, 2024

  1. Add initial support for interpreting COPASI models using COPASI.js … 

    …JavaScript library. This new feature in SEEK enables interpreting COPASI-supported models directly in the client using this library.
    @whomingbird
    whomingbird committed Jun 18, 2024
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  2. move 'plotly-2.27.0.min.js' to 'application.js'

    @whomingbird
    whomingbird committed Jun 18, 2024
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Commits on Jun 20, 2024

  1. Hide "Simulate Model on Copasi" button if no local model file exists

    @whomingbird
    whomingbird committed Jun 20, 2024
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  2. Load the first COPASI-compatible item when multiple items are associa… 

    …ted with a model.
    @whomingbird
    whomingbird committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. bug fix: Load the first COPASI-compatible item to CopasiUI (the desk … 

    …application) when multiple items are associated with a model.
    @whomingbird
    whomingbird committed Jun 21, 2024
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  2. make sure a non-public model can be loaded to Copasi with a temporary… 

    … access link.
    @whomingbird
    whomingbird committed Jun 21, 2024
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  3. Show the "Simulate Model on Copasi" button on the model page if the u… 

    …ser has the right to download the asset.
    @whomingbird
    whomingbird committed Jun 21, 2024
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Commits on Jun 27, 2024

  1. When the model is not publicly accessible but can be downloaded by th… 

    …e current user, use SpecialAuthCode to enable loading the model into CopasiUI (desktop application)
    @whomingbird
    whomingbird committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. minor tweak

    @whomingbird
    whomingbird committed Jun 28, 2024
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  2. add tests for 'Simulate Model on Copasi button visibility'

    @whomingbird
    whomingbird committed Jun 28, 2024
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  3. delete unnecessary HTML

    @whomingbird
    whomingbird committed Jun 28, 2024
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  4. add unit tests for copasi models

    @whomingbird
    whomingbird committed Jun 28, 2024
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  5. add tests for "copasi simulate" action

    @whomingbird
    whomingbird committed Jun 28, 2024
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  6. update route

    @whomingbird
    whomingbird committed Jun 28, 2024
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Commits on Jul 1, 2024

  1. add test to verify the correct version is loaded in the simulation

    @whomingbird
    whomingbird committed Jul 1, 2024
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Commits on Oct 2, 2024

  1. introduces three input fields for parameter inputs on the COPASI simu… 

    …lation page. These parameters can now be included when running model simulations, providing enhanced flexibility in configuration.
    @whomingbird
    whomingbird committed Oct 2, 2024
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  2. add tabs for showing details of cps model

    @whomingbird
    whomingbird committed Oct 2, 2024
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Commits on Oct 9, 2024

  1. refactoring copasi javascript

    @whomingbird
    whomingbird committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. update the view and fix the tab display problem

    @whomingbird
    whomingbird committed Oct 10, 2024
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  2. Check the functionality of the 'Simulate in CopasiUI' button for mode… 

    …ls that are not publicly accessible but available for download by the current user, requiring a special authentication code.
    @whomingbird
    whomingbird committed Oct 10, 2024
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  3. Ensure copasi_enabled is checked before executing the `copasi_simul… 

    …ate` action.
    @whomingbird
    whomingbird committed Oct 10, 2024
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  4. add a test of simulating copasi when model is private

    @whomingbird
    whomingbird committed Oct 10, 2024
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  5. Merge branch 'main' into copasi-javascript-support

    @whomingbird
    whomingbird committed Oct 10, 2024
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  6. Log run actions for copasi simulation

    @whomingbird
    whomingbird committed Oct 10, 2024
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Commits on Oct 11, 2024

  1. fix XSS vulnerability issue

    @whomingbird
    whomingbird committed Oct 11, 2024
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Commits on Oct 16, 2024

  1. move the 3rd party javascript to vendor/assets/javascript

    @whomingbird
    whomingbird committed Oct 16, 2024
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  2. fix typo

    @whomingbird
    whomingbird committed Oct 16, 2024
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  3. no migration, so no changes in schema.rb

    @whomingbird
    whomingbird committed Oct 16, 2024
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  4. don't use :x=> !

    @whomingbird
    whomingbird committed Oct 16, 2024
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  5. update tooltip text of copasi button

    @whomingbird
    whomingbird committed Oct 16, 2024
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  6. merge main branch

    @whomingbird
    whomingbird committed Oct 16, 2024
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  7. refactoring

    @whomingbird
    whomingbird committed Oct 16, 2024
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  8. correct the action translation

    @whomingbird
    whomingbird committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. fix test

    @whomingbird
    whomingbird committed Oct 17, 2024
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  2. use with_config_value in the test

    @whomingbird
    whomingbird committed Oct 17, 2024
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Commits on Oct 18, 2024

  1. merge main

    @whomingbird
    whomingbird committed Oct 18, 2024
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