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32 Open 141 Closed
32 Open 141 Closed
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Issues list

convert hic merged mapped bam file to bin file enhancement New feature or request
#318 opened Sep 5, 2024 by yumisims
@yumisims
Add steps for subworkflows
#317 opened Sep 3, 2024 by DLBPointon
output hic mapped bam when genome size > 4G enhancement New feature or request
#315 opened Aug 22, 2024 by yumisims
@weaglesBio
1
Test data location enhancement New feature or request
#314 opened Aug 16, 2024 by muffato
1
Missing data bug Something isn't working
#313 opened Aug 16, 2024 by muffato
Ensure s3 paths work enhancement New feature or request
#310 opened Jul 18, 2024 by DLBPointon
Reformat_intersect needs version output bug Something isn't working
#309 opened Jul 16, 2024 by DLBPointon
1
Add No Conda support notices enhancement New feature or request
#308 opened Jul 16, 2024 by DLBPointon
1
JBrowse only workflow enhancement New feature or request
#305 opened Jul 12, 2024 by DLBPointon
1
BWA-MEM2 is not configurable from modules.config bug Something isn't working
#304 opened Jul 9, 2024 by DLBPointon
1
[1.2.0] - PacBio Only enhancement New feature or request
#297 opened May 14, 2024 by DLBPointon
5
[1.1.2] Remove executables from bin and generate containers if required enhancement New feature or request
#296 opened May 13, 2024 by DLBPointon
1
gap track need sorting to avoid error bug Something isn't working
#294 opened Apr 9, 2024 by yumisims
@yumisims
[1.2.0 - Ancient Destiny] Chunk fasta reads for better parallelization for revio pacbio data
#285 opened Mar 20, 2024 by DLBPointon
4
[1.3.0 - Ancient Puddlejumper] - Yet Another Module Update! enhancement New feature or request
#284 opened Mar 15, 2024 by DLBPointon Release 1
@DLBPointon
Resources review - specify for each module ( adjust resources Updates to base.config to optimise resources for all data sizes.. enhancement New feature or request
#252 opened Feb 13, 2024 by weaglesBio
@yumisims @DLBPointon @weaglesBio
6
v2 - PNG display plugin for JBrowse enhancement New feature or request help wanted Extra attention is needed
#251 opened Feb 13, 2024 by DLBPointon
1
Robustness Assessment enhancement New feature or request
#249 opened Feb 9, 2024 by yumisims
@yumisims @DLBPointon @weaglesBio
v2 - Mapped subsetting enhancement New feature or request
#243 opened Feb 8, 2024 by DLBPointon Release 2
@DLBPointon
1
csv generator should be changed to only accept absolute paths enhancement New feature or request
#227 opened Jan 31, 2024 by DLBPointon
@DLBPointon
CAT_CAT should only be run on file count > 1 enhancement New feature or request
#189 opened Jan 8, 2024 by DLBPointon Release 2
@DLBPointon
Add max cutoff coverage track enhancement New feature or request
#179 opened Nov 23, 2023 by weaglesBio
YAML validator Release 2 Issues related to the TreeVal 2.0
#151 opened Sep 26, 2023 by DLBPointon Release 2
@DLBPointon
1
Release 2 - Coversion of input csv contamination into bed format Release 2 Issues related to the TreeVal 2.0
#139 opened Sep 14, 2023 by DLBPointon Release 2
1
Information - Local Testing documentation Improvements or additions to documentation
#136 opened Sep 6, 2023 by DLBPointon
@yumisims @DLBPointon @weaglesBio
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