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26 Open 152 Closed
26 Open 152 Closed
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Issues list

ERROR ~ No such variable: coverage_report bug Something isn't working
#343 opened Dec 6, 2024 by Surbhigrewal
2
1
Treeval pipeline usage has a mistake bug Something isn't working documentation Improvements or additions to documentation
#342 opened Nov 29, 2024 by Surbhigrewal Release 1
1
@DLBPointon
1
Refactor enhancement New feature or request
#324 opened Nov 15, 2024 by DLBPointon
@DLBPointon
Please update Pretext Docker image in nf-core modules bug Something isn't working
#323 opened Nov 8, 2024 by gq1
@yumisims
1
Test data location enhancement New feature or request
#314 opened Aug 16, 2024 by muffato
1
Missing data bug Something isn't working
#313 opened Aug 16, 2024 by muffato
Ensure s3 paths work enhancement New feature or request
#310 opened Jul 18, 2024 by DLBPointon
[1.2.0] - PacBio Only enhancement New feature or request
#297 opened May 14, 2024 by DLBPointon
5
[1.1.2] Remove executables from bin and generate containers if required enhancement New feature or request
#296 opened May 13, 2024 by DLBPointon
2
[1.2.0 - Ancient Destiny] Chunk fasta reads for better parallelization for revio pacbio data
#285 opened Mar 20, 2024 by DLBPointon
4
[1.3.0 - Ancient Puddlejumper] - Yet Another Module Update! enhancement New feature or request
#284 opened Mar 15, 2024 by DLBPointon Release 1
1
@DLBPointon
1
Resources review - specify for each module ( adjust resources Updates to base.config to optimise resources for all data sizes.. enhancement New feature or request
#252 opened Feb 13, 2024 by weaglesBio
@yumisims @DLBPointon @weaglesBio
6
v2 - PNG display plugin for JBrowse enhancement New feature or request help wanted Extra attention is needed
#251 opened Feb 13, 2024 by DLBPointon
1
v2 - Mapped subsetting enhancement New feature or request
#243 opened Feb 8, 2024 by DLBPointon Release 2
@DLBPointon
1
csv generator should be changed to only accept absolute paths enhancement New feature or request
#227 opened Jan 31, 2024 by DLBPointon
@DLBPointon
CAT_CAT should only be run on file count > 1 enhancement New feature or request
#189 opened Jan 8, 2024 by DLBPointon Release 2
@DLBPointon
Add max cutoff coverage track enhancement New feature or request
#179 opened Nov 23, 2023 by weaglesBio
YAML validator Release 2 Issues related to the TreeVal 2.0
#151 opened Sep 26, 2023 by DLBPointon Release 2
@DLBPointon
1
Release 2 - Coversion of input csv contamination into bed format Release 2 Issues related to the TreeVal 2.0
#139 opened Sep 14, 2023 by DLBPointon Release 2
1
Information - Local Testing documentation Improvements or additions to documentation
#136 opened Sep 6, 2023 by DLBPointon
@yumisims @DLBPointon @weaglesBio
Automatic Telomere ID and Comparison Release 2 Issues related to the TreeVal 2.0
#128 opened Jul 20, 2023 by DLBPointon Release 2
1
INVESTIGATION: Organellar investigation enhancement New feature or request Release Limbo Issues not yet assigned to a release Stale
#119 opened Jun 20, 2023 by DLBPointon
1
Gene set tracks are returning ENS not gene_name bug Something isn't working Release 2 Issues related to the TreeVal 2.0
#113 opened Jun 13, 2023 by DLBPointon Release 2
2
Release 3 - Investigate alternative programs enhancement New feature or request Release 3 Issues required for release 3
#110 opened Jun 7, 2023 by DLBPointon Release 3
1
Add yaml for hard-coded tool parameters. enhancement New feature or request Release Limbo Issues not yet assigned to a release
#101 opened Jun 2, 2023 by weaglesBio
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