Merge pull request #188 from sanger-tol/cat_config_fix #18
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: sanger-tol LSF full size tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run LSF full size tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Sets env vars for push | |
| run: | | |
| echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV | |
| if: github.event_name == 'push' | |
| - name: Sets env vars for workflow_dispatch | |
| run: | | |
| echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV | |
| if: github.event_name == 'workflow_dispatch' | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| revision: ${{ env.REVISION }} | |
| workdir: ${{ secrets.TOWER_WORKDIR_PARENT }}/work/${{ github.repository }}/work-${{ env.REVISION }} | |
| parameters: | | |
| { | |
| "outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ env.REVISION }}", | |
| } | |
| profiles: test_full,sanger,singularity,cleanup | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |