Skip to content
Python tests

refact: Use same org_path as modulesrepo first #129

Sign in to view logs

refact: Use same org_path as modulesrepo first

refact: Use same org_path as modulesrepo first #129

Triggered via pull request December 16, 2024 11:13
@jvfejvfe
synchronize #22
org_path_fix
Status Cancelled
Total duration 10m 6s
Artifacts 49

pytest.yml

on: pull_request
Matrix: setup
Get test file matrix
3s
Get test file matrix
Matrix: test
coverage
0s
coverage
Fit to window
Zoom out
Zoom in

Annotations

6 errors and 109 warnings
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-20.04
Process completed with exit code 1.
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-20.04
Process completed with exit code 1.
Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
Process completed with exit code 1.
Run test_components.py with Python 3.8 on ubuntu-20.04
Canceling since a higher priority waiting request for 'Python tests-22' exists
Run subworkflows/test_update.py with Python 3.8 on ubuntu-20.04
Canceling since a higher priority waiting request for 'Python tests-22' exists
Run subworkflows/test_update.py with Python 3.8 on ubuntu-20.04
The operation was canceled.
setup (3.12, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Get test file matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.8, ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
setup (3.8, ubuntu-20.04)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_list.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_list.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_download.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_lint.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_remove.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_info.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_create.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_cli.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_cli.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_pipelines.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_pipelines.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_launch.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_subworkflows.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_subworkflows.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_rocrate.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_test_utils.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_patch.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_modules.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_modules.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_list.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_install.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_lint_utils.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_lint_utils.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_info.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_create.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_list.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run test_utils.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_sync.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run pipelines/test_schema.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_modules_json.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_update.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.8 on ubuntu-20.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run modules/test_lint.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.8 on ubuntu-20.04
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
coverage_modules__test_bump_versions.py
5.84 KB
coverage_modules__test_create.py
5.83 KB
coverage_modules__test_info.py
5.92 KB
coverage_modules__test_install.py
5.89 KB
coverage_modules__test_lint.py
7.14 KB
coverage_modules__test_list.py
5.94 KB
coverage_modules__test_modules_json.py
6 KB
coverage_modules__test_patch.py
6.11 KB
coverage_modules__test_remove.py
5.87 KB
coverage_modules__test_update.py
6.13 KB
coverage_pipelines__lint__test_actions_awsfulltest.py
6.62 KB
coverage_pipelines__lint__test_actions_awstest.py
6.62 KB
coverage_pipelines__lint__test_actions_ci.py
6.62 KB
coverage_pipelines__lint__test_actions_schema_validation.py
6.62 KB
coverage_pipelines__lint__test_configs.py
6.62 KB
coverage_pipelines__lint__test_files_exist.py
6.64 KB
coverage_pipelines__lint__test_files_unchanged.py
6.64 KB
coverage_pipelines__lint__test_merge_markers.py
6.62 KB
coverage_pipelines__lint__test_modules_json.py
6.62 KB
coverage_pipelines__lint__test_multiqc_config.py
6.69 KB
coverage_pipelines__lint__test_nextflow_config.py
6.68 KB
coverage_pipelines__lint__test_nfcore_yml.py
6.62 KB
coverage_pipelines__lint__test_plugin_includes.py
6.61 KB
coverage_pipelines__lint__test_template_strings.py
6.93 KB
coverage_pipelines__lint__test_version_consistency.py
6.68 KB
coverage_pipelines__test_bump_version.py
5.35 KB
coverage_pipelines__test_create.py
5.3 KB
coverage_pipelines__test_create_app.py
5.32 KB
coverage_pipelines__test_create_logo.py
5.29 KB
coverage_pipelines__test_download.py
5.67 KB
coverage_pipelines__test_launch.py
5.46 KB
coverage_pipelines__test_lint.py
6.97 KB
coverage_pipelines__test_list.py
5.18 KB
coverage_pipelines__test_params_file.py
5.4 KB
coverage_pipelines__test_refgenie.py
5.18 KB
coverage_pipelines__test_rocrate.py
5.31 KB
coverage_pipelines__test_schema.py
5.4 KB
coverage_pipelines__test_sync.py
5.4 KB
coverage_subworkflows__test_create.py
6.71 KB
coverage_subworkflows__test_info.py
6.79 KB
coverage_subworkflows__test_lint.py
6.96 KB
coverage_subworkflows__test_list.py
6.79 KB
coverage_test_cli.py
7.04 KB
coverage_test_lint_utils.py
5.14 KB
coverage_test_modules.py
5.77 KB
coverage_test_pipelines.py
5.15 KB
coverage_test_subworkflows.py
6.48 KB
coverage_test_test_utils.py
5.15 KB
coverage_test_utils.py
5.33 KB