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Fix CRAMReferenceRegion updating. #1708

Merged
merged 9 commits into from
Jun 4, 2024
Merged

Fix CRAMReferenceRegion updating. #1708

merged 9 commits into from
Jun 4, 2024

Commits on Apr 10, 2024

  1. Fix CRAM reference region transitions.

    @cmnbroad
    cmnbroad committed Apr 10, 2024
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Commits on May 7, 2024

  1. Add roundtrip tests that fail without this change.

    @cmnbroad
    cmnbroad committed May 7, 2024
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Commits on May 13, 2024

  1. Add roundtrip tests with 2 and 3 containers aligned to position 1.

    @cmnbroad
    cmnbroad committed May 13, 2024
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  2. Add more roundtrip tests that validate bases.

    @cmnbroad
    cmnbroad committed May 13, 2024
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Commits on May 14, 2024

  1. Add a large CRAM roundtrip test and samtools rountdtip test.

    @cmnbroad
    cmnbroad committed May 14, 2024
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  2. Always remember your index files.

    @cmnbroad
    cmnbroad committed May 14, 2024
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Commits on Jun 3, 2024

  1. Code review comments.

    @cmnbroad
    cmnbroad committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. One more change based on review.

    @cmnbroad
    cmnbroad committed Jun 4, 2024
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  2. One more update.

    @cmnbroad
    cmnbroad committed Jun 4, 2024
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