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Re-Ordering priority in SeekableStreamFactory #1693

Merged
merged 5 commits into from
Dec 12, 2023
Merged

Re-Ordering priority in SeekableStreamFactory #1693

merged 5 commits into from
Dec 12, 2023

Commits on Dec 11, 2023

  1. Re-Ordering priority in SeekableStreamFactory 

    * Now when constructing streams it will prefer NIO plugins.
* If no http / ftp plugin exists it will fall back to the htsjdk bulit in
* No longer special casing local files, these will now be handled through NIO as well.
* Deprecating SeekableStreamFactory.isFilePath() since it is no longer used and interacts poorly
  with nio filesystem providers
    @lbergelson
    lbergelson committed Dec 11, 2023
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  2. Also handling ParsingUtils

    @lbergelson
    lbergelson committed Dec 11, 2023
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Commits on Dec 12, 2023

  1. update HtsPath to throw on non file schemes with malformed URIs inste… 

    …ad of trying to interpret them as file://
    @lbergelson
    lbergelson committed Dec 12, 2023
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  2. try this

    @lbergelson
    lbergelson committed Dec 12, 2023
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  3. respond to comments

    @lbergelson
    lbergelson committed Dec 12, 2023
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