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24 Open 20 Closed
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Issues list

When I use QUILT2 to imputate 82 individuals, the running speed is very slow
#47 opened Nov 20, 2024 by bbdragon1
2
When using QUILT2.R to impute downsampled data with the gold standard file as the reference panel, an issue occurs.
#46 opened Nov 5, 2024 by bbdragon1
4
Handling indels
#45 opened Nov 4, 2024 by PMuchina
4
Does adding --posfile and --phasefile affect imputation speed, accuracy, etc.?
#44 opened Nov 4, 2024 by bbdragon1
1
Sequence quality effects
#39 opened Aug 20, 2024 by LizzieMcDizzie
1
Haploid regions like X,Y non PAR regions enhancement New feature or request
#38 opened Jul 29, 2024 by sounkou-bioinfo
Error : sort_index(): detected NaN
#31 opened Apr 7, 2024 by zz-yun
2
Error in Rcpp_get_top_K_or_more_matches_while_building_gamma
#29 opened Mar 3, 2024 by jungleY078
2
Empty output "Insufficiently many confident reads for aggregating across runs"
#27 opened Feb 6, 2024 by marromesc
3
Impute specific variants using QUILT
#25 opened Mar 24, 2023 by biozzq
1
INFO SCORE across multiple samples good first issue Good for newcomers
#24 opened Mar 9, 2023 by SABiagini
2
sorted and duplicated position enhancement New feature or request
#23 opened Feb 22, 2023 by fengxiuming
5
Multicore (in)efficiency
#22 opened Jan 30, 2023 by moravveji
5
question about regionStart - regionEnd
#20 opened Nov 9, 2022 by aheritas
3
preparing data for imputation with QUILT
#19 opened Sep 16, 2022 by genaev
1
GT/GP discrepancy and INFO_SCORE reliability
#17 opened May 5, 2022 by SABiagini
11
Error in check_mclapply_OK(complete_set_of_results)
#15 opened Mar 18, 2022 by SABiagini
8
"0 in the intersection of the posfile and the reference haplotypes"
#14 opened Mar 16, 2022 by karstyl
4
scheduled core X encountered error in user code, all values of the job will be affected
#12 opened Jan 19, 2022 by ZheZhang-ZZ
2
CHM13, high-coverage imputation
#11 opened Dec 26, 2021 by gevro
1
Make HLA supplementary file
#8 opened Dec 10, 2021 by Zepeng-Mu
7
GRCh38 genetic map
#7 opened Oct 14, 2021 by SABiagini
7
Mixed race's genetic map file?
#4 opened Aug 15, 2021 by chulghim
1
Generic genetic map
#2 opened Jul 21, 2021 by rodrigopsav
5
ProTip! What’s not been updated in a month: updated:<2024-12-20.