Skip to content

@flatironinstitute Flatiron Institute

Change the repository type filter

All

    Repositories list

    179 repositories

    • FMM3D

      Public
      Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.
      Fortran
      •
      Other
      •38•98•21•1•Updated Nov 6, 2024Nov 6, 2024

    • PyBenchFramework

      Public
      BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.
      Python
      •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • adapol

      Public
      Adaptive Pole Fitting for Quantum Many-Body Physics
      Jupyter Notebook
      •1•11•0•0•Updated Nov 5, 2024Nov 5, 2024

    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      TypeScript
      •
      Apache License 2.0
      •6•44•52•1•Updated Nov 5, 2024Nov 5, 2024

    • stan-playground

      Public
      Run Stan models in the browser
      TypeScript
      •
      Apache License 2.0
      •1•29•17•1•Updated Nov 5, 2024Nov 5, 2024

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      •
      Other
      •79•297•52•6•Updated Nov 5, 2024Nov 5, 2024

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •8•82•86•4•Updated Nov 5, 2024Nov 5, 2024

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.3k•2•0•13•Updated Nov 5, 2024Nov 5, 2024

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •2•32•4•0•Updated Nov 4, 2024Nov 4, 2024

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      Python
      •
      Apache License 2.0
      •3•80•5•1•Updated Nov 4, 2024Nov 4, 2024

    • ManifoldEM

      Public
      Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
      Python
      •
      GNU General Public License v3.0
      •1•7•3•0•Updated Nov 4, 2024Nov 4, 2024

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •4•38•1•4•Updated Nov 4, 2024Nov 4, 2024

    • inferelator-prior

      Public
      Gene regulatory network inference using DNA-binding motifs and chromatin accessibility data.
      networkinference
      Python
      •
      MIT License
      •3•9•0•0•Updated Nov 1, 2024Nov 1, 2024

    • sciware

      Public
      Learning materials for scientific software development
      learningscienceeducationsoftware-development
      HTML
      •35•78•2•0•Updated Oct 31, 2024Oct 31, 2024

    • aLENS_analysis

      Public
      Postprocessing & analysis scripts for aLENS data
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • FlatironMDCourse

      Public
      Flatiron Institute MD Course
      Jupyter Notebook
      •
      MIT License
      •1•6•0•0•Updated Oct 30, 2024Oct 30, 2024

    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      •
      MIT License
      •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • ExEnDiff

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • kachery-cloud

      Public
      Python
      •
      Apache License 2.0
      •4•20•9•1•Updated Oct 28, 2024Oct 28, 2024

    • CryoLike

      Public
      Python
      •
      MIT License
      •0•5•0•0•Updated Oct 25, 2024Oct 25, 2024

    • clair

      Public
      Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
      C++
      •
      Apache License 2.0
      •1•10•3•0•Updated Oct 23, 2024Oct 23, 2024

    • c2py

      Public
      Clair/c2py low level library
      C++
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 22, 2024Oct 22, 2024

    • MutantAutoMate

      Public
      Python
      •1•0•4•2•Updated Oct 18, 2024Oct 18, 2024

    • sparse_dot

      Public
      Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication
      pythonsparsesparse-matrixnumpymatrix-multiplicationscipymkl
      Python
      •
      MIT License
      •11•74•3•1•Updated Oct 18, 2024Oct 18, 2024

    • lineage_viewer

      Public
      Graphical interface for editing a lineage and viewing related microscopy images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•1•Updated Oct 15, 2024Oct 15, 2024

    • cryosvd

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated Oct 14, 2024Oct 14, 2024

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      2-photoncalcium-imagingmotion-correctionsource-extractiondeconvolutioncnmf
      Python
      •
      GNU General Public License v2.0
      •370•637•72•8•Updated Oct 12, 2024Oct 12, 2024

    • fasthog

      Public
      Reasonably fast implementation of Histogram of Oriented Gradients with python bindings
      C++
      •
      MIT License
      •1•0•0•0•Updated Oct 5, 2024Oct 5, 2024

    • Sommerfeld

      Public
      Codes for layered dielectric media
      Fortran
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • sciware_awful_cp

      Public
      Example of a small package that won't work with the system libstdc++
      C++
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024