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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 646 369

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 311 80

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 311 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 184 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 83 MIT 8 99 4 Updated Jan 10, 2025
  • dendro-docs Public

    Documentation for Dendro

    flatironinstitute/dendro-docs’s past year of commit activity
    TypeScript 1 1 3 0 Updated Jan 10, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 10, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 10, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 646 GPL-2.0 369 77 (1 issue needs help) 9 Updated Jan 10, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 39 Apache-2.0 1 18 2 Updated Jan 10, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 311 80 55 (3 issues need help) 8 Updated Jan 10, 2025
  • indico-slack-bot Public

    Bot that sends daily updates of Indico events to Slack.

    flatironinstitute/indico-slack-bot’s past year of commit activity
    JavaScript 1 Apache-2.0 1 0 0 Updated Jan 10, 2025
  • fmm2d Public

    This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.

    flatironinstitute/fmm2d’s past year of commit activity
    Fortran 24 Apache-2.0 11 6 0 Updated Jan 9, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,353 0 16 Updated Jan 9, 2025
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