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    209 repositories

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•2•Updated Oct 23, 2024Oct 23, 2024

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Oct 23, 2024Oct 23, 2024

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •8•36•1•0•Updated Oct 23, 2024Oct 23, 2024

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•0•2•1•Updated Oct 23, 2024Oct 23, 2024

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•51•0•4•Updated Oct 23, 2024Oct 23, 2024

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •2•0•5•2•Updated Oct 22, 2024Oct 22, 2024

    • ensembl-metadata

      Public
      API for storing and querying metadata from Ensembl and EnsemblGenomes
      Perl
      •
      Apache License 2.0
      •5•5•0•1•Updated Oct 22, 2024Oct 22, 2024

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •50•22•0•3•Updated Oct 22, 2024Oct 22, 2024

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •42•11•0•9•Updated Oct 22, 2024Oct 22, 2024

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•1•Updated Oct 22, 2024Oct 22, 2024

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•16•0•0•Updated Oct 21, 2024Oct 21, 2024

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•0•Updated Oct 21, 2024Oct 21, 2024

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •62•140•1•0•Updated Oct 21, 2024Oct 21, 2024

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •151•452•45•10•Updated Oct 21, 2024Oct 21, 2024

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•3•Updated Oct 18, 2024Oct 18, 2024

    • GIFTS

      Public
      Perl
      •1•3•1•0•Updated Oct 18, 2024Oct 18, 2024

    • ensembl-production-services

      Public
      Ensembl production service portal
      djangodjango-rest-frameworkpython3
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Oct 18, 2024Oct 18, 2024

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•2•Updated Oct 18, 2024Oct 18, 2024

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •75•79•1•1•Updated Oct 18, 2024Oct 18, 2024

    • ensembl-prodinf-masterdb

      Public
      Ensembl Browser Reference Database Administration Backend
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • ensembl-otter

      Public
      annosoft
      Perl
      •3•3•0•0•Updated Oct 18, 2024Oct 18, 2024

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 17, 2024Oct 17, 2024

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•6•Updated Oct 17, 2024Oct 17, 2024

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythondockerpipelinesqliteperlpostgresqlslurmehiveensembl
      Perl
      •
      Apache License 2.0
      •28•52•0•3•Updated Oct 16, 2024Oct 16, 2024

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •4•1•0•4•Updated Oct 16, 2024Oct 16, 2024

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •3•1•0•2•Updated Oct 16, 2024Oct 16, 2024

    • ensembl-prodinf-core

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 15, 2024Oct 15, 2024