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Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 457 154

  2. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 145 25

  3. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 142 117

  4. ensembl-rest ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 141 63

  5. ensembl ensembl Public

    The Ensembl Core Perl API and SQL schema

    Perl 80 76

  6. ensembl-pipeline ensembl-pipeline Public

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 60 29

Repositories

Showing 10 of 210 repositories
  • ensembl-production Public

    Ensembl Production code

    Ensembl/ensembl-production’s past year of commit activity
    Perl 11 Apache-2.0 42 0 9 Updated Dec 25, 2024
  • ensembl-genes Public

    Python Ensembl Gene Annotation code source repository

    Ensembl/ensembl-genes’s past year of commit activity
    Python 4 Apache-2.0 3 0 1 Updated Dec 24, 2024
  • Ensembl/ensembl-web-resolver’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Dec 24, 2024
  • ensembl-client Public

    Ensembl beta client

    Ensembl/ensembl-client’s past year of commit activity
    TypeScript 13 Apache-2.0 4 0 2 Updated Dec 23, 2024
  • ensembl-genomio Public

    Pipelines to turn basic genomic data into Ensembl cores and back

    Ensembl/ensembl-genomio’s past year of commit activity
    Python 9 Apache-2.0 7 0 1 Updated Dec 23, 2024
  • Ensembl/ensembl-refget’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 23, 2024
  • ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Ensembl/ensembl-rest’s past year of commit activity
    Perl 141 Apache-2.0 63 1 0 Updated Dec 20, 2024
  • ensembl-dauphin-style-compiler Public

    "dauphin" style-compiler for genome browser

    Ensembl/ensembl-dauphin-style-compiler’s past year of commit activity
    Rust 0 0 9 2 Updated Dec 19, 2024
  • datascout Public

    queries and gather data from different resources which can then be used to run bulk automatised annotation of microbial genomes.The different types of data are: OrthoDB and UniProt orthology data; Rfam (non coding Rna data); Transcriptomic data from ENA

    Ensembl/datascout’s past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Dec 19, 2024
  • ensembl-production-imported Public

    Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)

    Ensembl/ensembl-production-imported’s past year of commit activity
    Perl 1 Apache-2.0 4 0 0 Updated Dec 19, 2024