Add Welsh et al. epitope sites and escape scores #135
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Adds distance maps for epitope sites and average escape scores based on antigenic escape scores from Welsh et al. 2023 [1], adds these maps to the distance maps config, and only exposes these distances through the nextflu-private builds Auspice config JSON for now. Adds the Python notebook used to generate these distance maps from the original raw data, so we can rebuild them later as needed. [1] https://www.biorxiv.org/content/10.1101/2023.12.12.571235v1
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Description of proposed changes
Adds distance maps for epitope sites and average escape scores based on antigenic escape scores from Welsh et al. 2023 [1], adds these maps to the distance maps config, and only exposes these distances through the nextflu-private builds Auspice config JSON for now. Adds the Python notebook used to generate these distance maps from the original raw data, so we can rebuild them later as needed.
[1] https://www.biorxiv.org/content/10.1101/2023.12.12.571235v1
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