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Improve analysis #49

Merged
merged 126 commits into from
May 5, 2023
Merged

Improve analysis #49

merged 126 commits into from
May 5, 2023

Commits on Mar 6, 2023

  1. Change imports

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Commits on Mar 7, 2023

  1. Change imports

    @lauraporta
    lauraporta committed Mar 7, 2023
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  2. Add draft dashboard (very ugly)

    @lauraporta
    lauraporta committed Mar 7, 2023
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  3. Add sublots of SF/TF

    @lauraporta
    lauraporta committed Mar 7, 2023
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Commits on Mar 8, 2023

  1. Improve subplots

    @lauraporta
    lauraporta committed Mar 8, 2023
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Commits on Mar 9, 2023

  1. Add heatmaps with first version of gaussian fit

    @lauraporta
    lauraporta committed Mar 9, 2023
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Commits on Mar 14, 2023

  1. Add massive refactoring

    @lauraporta
    lauraporta committed Mar 14, 2023
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  2. Add docs to keep track of progress

    @lauraporta
    lauraporta committed Mar 14, 2023
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  3. Test image rendering

    @lauraporta
    lauraporta committed Mar 14, 2023
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  4. Finalize image view on md file

    @lauraporta
    lauraporta committed Mar 14, 2023
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  5. Move methods in correct modules (more refactoring)

    @lauraporta
    lauraporta committed Mar 14, 2023
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  6. Add fixes for github actions

    @lauraporta
    lauraporta committed Mar 14, 2023
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Commits on Mar 15, 2023

  1. Begin to work on proper gaussian fit

    @lauraporta
    lauraporta committed Mar 15, 2023
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Commits on Mar 16, 2023

  1. Add improved version of gaussian fit - has a lot of hardcoded parameters

    @lauraporta
    lauraporta committed Mar 16, 2023
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  2. Update docs

    @lauraporta
    lauraporta committed Mar 16, 2023
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  3. Change image width

    @lauraporta
    lauraporta committed Mar 16, 2023
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  4. Document more: add traces screenshots

    @lauraporta
    lauraporta committed Mar 16, 2023
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  5. Edit image of matlab gaussian fit

    @lauraporta
    lauraporta committed Mar 16, 2023
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Commits on Mar 21, 2023

  1. Refactor: move calculations in the analysis part; Add murakami plot

    @lauraporta
    lauraporta committed Mar 21, 2023
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Commits on Mar 23, 2023

  1. Add more interactions for murakami plot and improve handling of frequ… 

    …encies
    @lauraporta
    lauraporta committed Mar 23, 2023
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  2. Add tox dependency

    @lauraporta
    lauraporta committed Mar 23, 2023
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  3. Improve gaussian plots

    @lauraporta
    lauraporta committed Mar 23, 2023
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  4. Improve line plot of the session

    @lauraporta
    lauraporta committed Mar 23, 2023
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Commits on Mar 24, 2023

  1. Add cruft link output

    @lauraporta
    lauraporta committed Mar 24, 2023
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  2. Change repository url

    @lauraporta
    lauraporta committed Mar 24, 2023
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  3. Change to the correct commit hash

    @lauraporta
    lauraporta committed Mar 24, 2023
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  4. Add results of cruft check

    @lauraporta
    lauraporta committed Mar 24, 2023
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  5. Add unrealted black changes

    @lauraporta
    lauraporta committed Mar 24, 2023
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  6. Add changes to manifest

    @lauraporta
    lauraporta committed Mar 24, 2023
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Commits on Mar 28, 2023

  1. Improve polar plots

    @lauraporta
    lauraporta committed Mar 28, 2023
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  2. Add edits of black

    @lauraporta
    lauraporta committed Mar 28, 2023
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  3. Add controllers to the direction plots

    @lauraporta
    lauraporta committed Mar 28, 2023
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  4. Add prettier direction controller

    @lauraporta
    lauraporta committed Mar 28, 2023
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  5. Fix some errors in the x/y labels

    @lauraporta
    lauraporta committed Mar 28, 2023
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  6. Fix presentation of direction plots

    @lauraporta
    lauraporta committed Mar 28, 2023
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Commits on Mar 30, 2023

  1. Get rid of hardcoded parameters

    @lauraporta
    lauraporta committed Mar 30, 2023
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  2. Improve direction controller, clean up

    @lauraporta
    lauraporta committed Mar 30, 2023
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  3. Clean up callbacks

    @lauraporta
    lauraporta committed Mar 30, 2023
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Commits on Apr 3, 2023

  1. Add typing

    @lauraporta
    lauraporta committed Apr 3, 2023
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  2. Fix division by 0 error

    @lauraporta
    lauraporta committed Apr 3, 2023
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  3. Refactor sf/tf attribute

    @lauraporta
    lauraporta committed Apr 3, 2023
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  4. Add more types for attributes for PhotonData and make complete list

    @lauraporta
    lauraporta committed Apr 3, 2023
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  5. Add missing types

    @lauraporta
    lauraporta committed Apr 3, 2023
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  6. Fix error in test relative to different sf/tf in mock data

    @lauraporta
    lauraporta committed Apr 3, 2023
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  7. Fixing error in test leads to curious result

    @lauraporta
    lauraporta committed Apr 3, 2023
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  8. Add tests for gaussian funcions and fitting

    @lauraporta
    lauraporta committed Apr 3, 2023
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Commits on Apr 4, 2023

  1. Add tests for static methods of sf tf analysis

    @lauraporta
    lauraporta committed Apr 4, 2023
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Commits on Apr 13, 2023

  1. Add script to store output data of correct analysis pipeline

    @lauraporta
    lauraporta committed Apr 13, 2023
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Commits on Apr 14, 2023

  1. Improve sf/tf analysis function tests

    @lauraporta
    lauraporta committed Apr 14, 2023
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Commits on Apr 17, 2023

  1. Add more improvements to tests

    @lauraporta
    lauraporta committed Apr 17, 2023
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  2. Add some docstrings and improve previous ones

    @lauraporta
    lauraporta committed Apr 17, 2023
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  3. Add use of poisson distribution in mock data

    @lauraporta
    lauraporta committed Apr 17, 2023
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  4. First version of statistical test report generator

    @lauraporta
    lauraporta committed Apr 17, 2023
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  5. Clean up

    @lauraporta
    lauraporta committed Apr 17, 2023
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  6. Fix linting

    @lauraporta
    lauraporta committed Apr 17, 2023
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  7. Remove changes related to dashboard from this branch

    @lauraporta
    lauraporta committed Apr 17, 2023
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  8. Merge branch 'developement' into improve-analysis

    @lauraporta
    lauraporta authored Apr 17, 2023
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  9. Remove images

    @lauraporta
    lauraporta committed Apr 17, 2023
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  10. Merge commit '26cda761e06bd9d68175e3d9bf9a7d200f18ab64' into improve-… 

    …analysis
    @lauraporta
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Commits on Apr 19, 2023

  1. Delete stats report since it belongs now to a different branch

    @lauraporta
    lauraporta committed Apr 19, 2023
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  2. Fix pandas and pickle interaction causing tox errors

    @lauraporta
    lauraporta committed Apr 19, 2023
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  3. Add changes made by ruff

    @lauraporta
    lauraporta committed Apr 19, 2023
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  4. Try this chatgpt github action workflow

    @lauraporta
    lauraporta committed Apr 19, 2023
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  5. Fix linting error

    @lauraporta
    lauraporta committed Apr 19, 2023
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Commits on Apr 20, 2023

  1. Change imports

    @lauraporta
    lauraporta committed Apr 20, 2023
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  2. Change imports

    @lauraporta
    lauraporta committed Apr 20, 2023
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  3. Add draft dashboard (very ugly)

    @lauraporta
    lauraporta committed Apr 20, 2023
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  4. Add sublots of SF/TF

    @lauraporta
    lauraporta committed Apr 20, 2023
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  5. Improve subplots

    @lauraporta
    lauraporta committed Apr 20, 2023
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  6. Add heatmaps with first version of gaussian fit

    @lauraporta
    lauraporta committed Apr 20, 2023
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  7. Add massive refactoring

    @lauraporta
    lauraporta committed Apr 20, 2023
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  8. Add docs to keep track of progress

    @lauraporta
    lauraporta committed Apr 20, 2023
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  9. Test image rendering

    @lauraporta
    lauraporta committed Apr 20, 2023
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  10. Finalize image view on md file

    @lauraporta
    lauraporta committed Apr 20, 2023
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  11. Move methods in correct modules (more refactoring)

    @lauraporta
    lauraporta committed Apr 20, 2023
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  12. Add fixes for github actions

    @lauraporta
    lauraporta committed Apr 20, 2023
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  13. Begin to work on proper gaussian fit

    @lauraporta
    lauraporta committed Apr 20, 2023
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  14. Add improved version of gaussian fit - has a lot of hardcoded parameters

    @lauraporta
    lauraporta committed Apr 20, 2023
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  15. Update docs

    @lauraporta
    lauraporta committed Apr 20, 2023
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  16. Change image width

    @lauraporta
    lauraporta committed Apr 20, 2023
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  17. Document more: add traces screenshots

    @lauraporta
    lauraporta committed Apr 20, 2023
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  18. Edit image of matlab gaussian fit

    @lauraporta
    lauraporta committed Apr 20, 2023
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  19. Refactor: move calculations in the analysis part; Add murakami plot

    @lauraporta
    lauraporta committed Apr 20, 2023
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  20. Add more interactions for murakami plot and improve handling of frequ… 

    …encies
    @lauraporta
    lauraporta committed Apr 20, 2023
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  21. Add tox dependency

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  22. Improve gaussian plots

    @lauraporta
    lauraporta committed Apr 20, 2023
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  23. Improve line plot of the session

    @lauraporta
    lauraporta committed Apr 20, 2023
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  24. Improve polar plots

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    lauraporta committed Apr 20, 2023
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  25. Add edits of black

    @lauraporta
    lauraporta committed Apr 20, 2023
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  26. Add controllers to the direction plots

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    lauraporta committed Apr 20, 2023
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  27. Add prettier direction controller

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    lauraporta committed Apr 20, 2023
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  28. Fix some errors in the x/y labels

    @lauraporta
    lauraporta committed Apr 20, 2023
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  29. Fix presentation of direction plots

    @lauraporta
    lauraporta committed Apr 20, 2023
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  30. Get rid of hardcoded parameters

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    lauraporta committed Apr 20, 2023
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  31. Improve direction controller, clean up

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    lauraporta committed Apr 20, 2023
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  32. Clean up callbacks

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  33. Add typing

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    lauraporta committed Apr 20, 2023
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  34. Fix division by 0 error

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    lauraporta committed Apr 20, 2023
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  35. Refactor sf/tf attribute

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    lauraporta committed Apr 20, 2023
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  36. Add more types for attributes for PhotonData and make complete list

    @lauraporta
    lauraporta committed Apr 20, 2023
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  37. Add missing types

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  38. Fix error in test relative to different sf/tf in mock data

    @lauraporta
    lauraporta committed Apr 20, 2023
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  39. Fixing error in test leads to curious result

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  40. Add tests for gaussian funcions and fitting

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  41. Add tests for static methods of sf tf analysis

    @lauraporta
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  42. Add script to store output data of correct analysis pipeline

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    lauraporta committed Apr 20, 2023
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  43. Improve sf/tf analysis function tests

    @lauraporta
    lauraporta committed Apr 20, 2023
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  44. Add more improvements to tests

    @lauraporta
    lauraporta committed Apr 20, 2023
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  45. Add some docstrings and improve previous ones

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    lauraporta committed Apr 20, 2023
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  46. Add use of poisson distribution in mock data

    @lauraporta
    lauraporta committed Apr 20, 2023
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  47. First version of statistical test report generator

    @lauraporta
    lauraporta committed Apr 20, 2023
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  48. Clean up

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  49. Fix linting

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    lauraporta committed Apr 20, 2023
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  50. Remove changes related to dashboard from this branch

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    lauraporta committed Apr 20, 2023
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  51. Remove images

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    lauraporta committed Apr 20, 2023
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  52. Add changes to manifest

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    lauraporta committed Apr 20, 2023
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  53. Delete stats report since it belongs now to a different branch

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    lauraporta committed Apr 20, 2023
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  54. Fix pandas and pickle interaction causing tox errors

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    lauraporta committed Apr 20, 2023
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  55. Add changes made by ruff

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    lauraporta committed Apr 20, 2023
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  56. Merge branch 'improve-analysis' of github.com:neuroinformatics-unit/l… 

    …oad-suite2p into improve-analysis
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  57. Add typing as suggested by chat-gpt reviewer

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    lauraporta committed Apr 20, 2023
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  58. Revert "Add typing as suggested by chat-gpt reviewer" 

    This reverts commit 5e61c49.
    @lauraporta
    lauraporta committed Apr 20, 2023
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  59. Add small explanation

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    lauraporta committed Apr 20, 2023
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  60. Update readme

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    lauraporta committed Apr 20, 2023
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  61. Fix ascii conversion error

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    lauraporta committed Apr 20, 2023
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  62. Fixes and docstring correction

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    lauraporta committed Apr 20, 2023
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