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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 105 8

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 15 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 24 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 55 repositories
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 105 BSD-3-Clause 8 83 13 Updated Nov 19, 2024
  • suite2p Public Forked from MouseLand/suite2p

    cell detection in calcium imaging recordings

    neuroinformatics-unit/suite2p’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 244 0 0 Updated Nov 19, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 25 3 Updated Nov 18, 2024
  • calcium-imaging-automation Public

    Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices

    neuroinformatics-unit/calcium-imaging-automation’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Nov 18, 2024
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    9 CC-BY-4.0 1 12 2 Updated Nov 18, 2024
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 14 4 Updated Nov 15, 2024
  • course-extracellular-ephys-analysis Public

    Covering how to build electrophysiology pipelines with SpikeInterface

    neuroinformatics-unit/course-extracellular-ephys-analysis’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Nov 5, 2024
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 24 BSD-3-Clause 3 14 1 Updated Nov 5, 2024
  • software-skills Public

    Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

    neuroinformatics-unit/software-skills’s past year of commit activity
    7 CC-BY-4.0 0 0 0 Updated Nov 5, 2024
  • swc-slack Public

    Tools to interface with slack

    neuroinformatics-unit/swc-slack’s past year of commit activity
    Python 7 BSD-3-Clause 1 0 0 Updated Nov 4, 2024
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