Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Metafusion/Fusion Annotation #50

Merged
merged 90 commits into from
Aug 18, 2023
Merged

Metafusion/Fusion Annotation #50

merged 90 commits into from
Aug 18, 2023

Conversation

pintoa1-mskcc
Copy link
Collaborator

This PR adds:

  1. conversion of Fusion tools results to CFF format.
  2. Merging the CFF files
  3. Metafusion
  4. Oncokb annotation to metafusion

anoronh4
anoronh4 requested changes Jun 27, 2023
View reviewed changes
modules/local/convert_to_cff/main.nf Outdated Show resolved Hide resolved
main_test.nf Outdated Show resolved Hide resolved
subworkflows/local/fusion.nf Show resolved Hide resolved
modules/local/metafusion/main.nf Outdated Show resolved Hide resolved
bin/Metafusion_forte.sh Show resolved Hide resolved
bin/make_cff_from_forte.R Show resolved Hide resolved
conf/igenomes.config Outdated Show resolved Hide resolved
subworkflows/local/fusion.nf Outdated Show resolved Hide resolved
subworkflows/local/fusion.nf Outdated Show resolved Hide resolved
anoronh4
anoronh4 reviewed Jul 26, 2023
View reviewed changes
bin/make_cff_from_forte.R Outdated Show resolved Hide resolved
@pintoa1-mskcc pintoa1-mskcc marked this pull request as draft July 26, 2023 20:28
@pintoa1-mskcc pintoa1-mskcc marked this pull request as ready for review August 2, 2023 17:18
@anoronh4 anoronh4 marked this pull request as ready for review August 12, 2023 02:46
@anoronh4 anoronh4 changed the title Metafusion Metafusion/Fusion Annotation Aug 12, 2023
@anoronh4 anoronh4 merged commit 56fad45 into develop Aug 18, 2023
3 checks passed
@anoronh4 anoronh4 linked an issue Aug 22, 2023 that may be closed by this pull request
Add AgFusion annotation #36
Closed
@anoronh4 anoronh4 mentioned this pull request Sep 11, 2023
Merged
@anoronh4 anoronh4 deleted the feature/make_cff branch October 30, 2024 15:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@anoronh4 anoronh4 anoronh4 approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Add AgFusion annotation
2 participants
@pintoa1-mskcc @anoronh4