Add Dockerfile #55
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Add Dockerfile #55
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This PR suggests a Dockerfile for HybPiper. This riffs on what @joelnitta did in #10 (and essentially includes #53), and takes advantage of newer dependencies now available in Ubuntu 20.04 + installs R dependencies for gene_recovery_heatmap_ggplot.R (gene_recovery_heatmap.R was not included, as its dependency heatmap.plus appears to be unmaintained---though maybe it just achieved a state of perfection years ago...).
All scripts are installed in /usr/local/bin in the container image, and gene_recovery_heatmap_ggplot.R modified to accept command-line arguments.
docker2singularity can be used to generate a Singularity image for use on a multi-tenant HPC cluster. I've only tested the functionality exercised by run_tests.sh (and generated a heatmap using gene_recovery_heatmap_ggplot.R), so caveat emptor: