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44 Open 102 Closed
44 Open 102 Closed
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Issues list

Hybpiper gives same output for paralogs_all and paralogs_no_chimeras
#160 opened Sep 17, 2024 by leminch
Can I assemble chloroplast genes with Hybpiper?
#145 opened Apr 22, 2024 by Wyclif3
2
'hybpiper assemble' didn't capture any target genes
#144 opened Apr 12, 2024 by xueqinerer
3
Issue with paralog_retriever
#143 opened Apr 2, 2024 by TiagoVieiraBotany
7
Target file - Hybpiper assemble with Spades
#137 opened Jan 18, 2024 by perezii
hybpiper assemble only BWA accomplished, but spades may not be performed
#136 opened Dec 9, 2023 by DL-Lin
8
Issue with retrieve_sequences.py
#132 opened Oct 8, 2023 by ZhiqiongMo
HybPiper on Galaxy
#130 opened Sep 27, 2023 by TomHarrop
1
Issue with distribute_reads_to_targets.py
#127 opened Jul 31, 2023 by Kedraous
4
option in Hybpiper 1.3 not in Hybpiper 2.1
#120 opened Jun 14, 2023 by veronicamb
14
fasta headers don't have gene name
#117 opened May 3, 2023 by GavSmy
2
Using fix_targetfile messes up with the target file
#115 opened Apr 14, 2023 by josh3397
3
Selection of the 'best' target file reference seqeuence for each gene
#114 opened Mar 23, 2023 by chrisjackson-pellicle
Error with running bbmap.sh during the stitched-contig chimera test for some genes.
#113 opened Mar 8, 2023 by Oulo
5
Output check of contig orientation and reading frame
#112 opened Mar 2, 2023 by bmichanderson
Flag/Subparser to specify output path suggestion
#111 opened Feb 16, 2023 by Eremus007
exonerate() raised: [Errno 24] Too many open files
#110 opened Feb 7, 2023 by Alicia-Talavera
11
Stop codons in the final assembly
#106 opened Dec 26, 2022 by junchen-deng
8
hybpiper assemble error
#105 opened Dec 13, 2022 by dianzhiyong
5
issue with exon sequences
#103 opened Nov 2, 2022 by annietaylor107
Locus sequence depth
#101 opened Sep 16, 2022 by andycrowl
1
hybpiper.assemble - assemble - ERROR - ERROR: No genes with reads, exiting!
#100 opened Sep 16, 2022 by XiaoTW123
10
Minimal outputs functionality
#98 opened Sep 7, 2022 by BenKuhnhaeuser
2
Running in cluster
#95 opened Aug 23, 2022 by angelicagallegonar
1
Combining different hybpiper runs together?
#92 opened Aug 9, 2022 by FrancisNge
2
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