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[email protected] committed Apr 9, 2024
1 parent 67926b8 commit f4dc7ae
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2 changes: 1 addition & 1 deletion snakePipes/workflows/mRNA-seq/Snakefile
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Expand Up @@ -126,7 +126,7 @@ include:os.path.join(maindir, "shared", "rules", "RNA-seq_qc_report.snakefile")

## DESeq2
if sampleSheet and not "three-prime-seq" in mode:
if isMultipleComparison and not "allelic-mapping" in mode and not "allelic-counting" in mode":
if isMultipleComparison and not "allelic-mapping" in mode and not "allelic-counting" in mode:
include: os.path.join(maindir, "shared", "rules", "DESeq2.multipleComp.snakefile")
if rMats:
include: os.path.join(maindir, "shared", "rules", "rMats.multipleComp.snakefile")
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