quotes

maxplanck-ie · Apr 9, 2024 · 67926b8 · 67926b8
1 parent 57e0cd4
commit 67926b8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snakePipes/shared/rules/LinkBam.snakefile b/snakePipes/shared/rules/LinkBam.snakefile
@@ -17,9 +17,9 @@ if pipeline=="mRNAseq" and mode in "allelic-counting":
 
     rule samtools_index_external:
         input:
-            "allelic_bams/{sample}.{suffix} + bamExt
+            "allelic_bams/{sample}.{suffix}" + bamExt
         output:
-            "allelic_bams/{sample}.{suffix} + bamExt + ".bai"
+            "allelic_bams/{sample}.{suffix}" + bamExt + ".bai"
         conda: CONDA_SHARED_ENV
         shell: "if [[ ! -f {output[0]} ]]; then samtools index {input[0]}; fi"