GitHub - linlin0026/fiber_-_10.1016-j.chom.2022.03.036: fiber_交叉三种膳食纤维干预实验

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fiber_交叉三种膳食纤维干预实验_10.1016/j.chom.2022.03.036

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Adding_Batch_Info.R		Adding_Batch_Info.R
Aggreg_Clustering.R		Aggreg_Clustering.R
Aggreg_Correlations.R		Aggreg_Correlations.R
Baseline_means.R		Baseline_means.R
Batch_Effects.r		Batch_Effects.r
Batch_Effects_gf_scg.R		Batch_Effects_gf_scg.R
Batch_Effects_rna_scg.R		Batch_Effects_rna_scg.R
Batch_effects_gf_scg.sh		Batch_effects_gf_scg.sh
Calculating_diversity.R		Calculating_diversity.R
Clinical_Aggregations.R		Clinical_Aggregations.R
Clinical_soft_clustering.R		Clinical_soft_clustering.R
Clustering_SLedits.py		Clustering_SLedits.py
CollectRNAseqMetrics.sh		CollectRNAseqMetrics.sh
Concatenating_human-stool-library2.sh		Concatenating_human-stool-library2.sh
Concatenating_second_RNA		Concatenating_second_RNA
Concatenating_test-lib.sh		Concatenating_test-lib.sh
DESeq2.sh		DESeq2.sh
DESeq2_WashoutD10.r		DESeq2_WashoutD10.r
DESeq2_condition.r		DESeq2_condition.r
DESeq2_condition.sh		DESeq2_condition.sh
DESeq2_fiber_week.r.sh		DESeq2_fiber_week.r.sh
DESeq2_fiber_week_A.r		DESeq2_fiber_week_A.r
DESeq2_fiber_week_A.sh		DESeq2_fiber_week_A.sh
DESeq2_fiber_week_A2.R		DESeq2_fiber_week_A2.R
DESeq2_fiber_week_B.r		DESeq2_fiber_week_B.r
DESeq2_fiber_week_B2.R		DESeq2_fiber_week_B2.R
DESeq2_fiber_week_submitting.txt		DESeq2_fiber_week_submitting.txt
DESeq2_gcloud.R		DESeq2_gcloud.R
DESeq2_gcloud_DEG.R		DESeq2_gcloud_DEG.R
DESeq2_gcloud_baseline.R		DESeq2_gcloud_baseline.R
DESeq2_gcloud_baseline_fall2018.R		DESeq2_gcloud_baseline_fall2018.R
DESeq2_gcloud_baseline_old.R		DESeq2_gcloud_baseline_old.R
DESeq2_gcloud_treatonly.R		DESeq2_gcloud_treatonly.R
DESeq2_week.r		DESeq2_week.r
DESeq2_week.sh		DESeq2_week.sh
DESeq2pipe.sh		DESeq2pipe.sh
DNAnexus.sh		DNAnexus.sh
David.R		David.R
David_corr_networks.R		David_corr_networks.R
DeseqVolcanoPlot.r		DeseqVolcanoPlot.r
EntrezID2GeneName.R		EntrezID2GeneName.R
Gene_id.r		Gene_id.r
GeneralizedPCLTernary.R		GeneralizedPCLTernary.R
GeneralizedPCLTernaryMetadataLoop.R		GeneralizedPCLTernaryMetadataLoop.R
GeneralizedRNATernary.R		GeneralizedRNATernary.R
GeneralizedRTernary.R		GeneralizedRTernary.R
GeneralizedRTernaryMetadataLoop.R		GeneralizedRTernaryMetadataLoop.R
Log_normalized_data_frames.R		Log_normalized_data_frames.R
Metagenome-C-means-clustering.R		Metagenome-C-means-clustering.R
Metagenome-taxa-C-means-clustering.R		Metagenome-taxa-C-means-clustering.R
MetagenomeClustering.R		MetagenomeClustering.R
Microbiome_Clinical_Correlations.R		Microbiome_Clinical_Correlations.R
Microbiome_Cytokine_Correlations.R		Microbiome_Cytokine_Correlations.R
Microbiome_Cytokine_Correlations_BN.R		Microbiome_Cytokine_Correlations_BN.R
Microbiome_Cytokine_Correlations_unBN.R		Microbiome_Cytokine_Correlations_unBN.R
MultiomicCorrelations.R		MultiomicCorrelations.R
Multiqc_scg.sh		Multiqc_scg.sh
Normalize_to_baseline.r		Normalize_to_baseline.r
Normalzied_data_frames.R		Normalzied_data_frames.R
OmicsCorrelations.R		OmicsCorrelations.R
PCLSupervisedClustering.R		PCLSupervisedClustering.R
PCLTernary.R		PCLTernary.R
Petra.1.R		Petra.1.R
Preparing_subsets_for_responder_vs_nonresponder.R		Preparing_subsets_for_responder_vs_nonresponder.R
RNA-C-means-clustering.R		RNA-C-means-clustering.R
RNATernary.r		RNATernary.r
RNA_Supervised_Clustering.R		RNA_Supervised_Clustering.R
RNA_correlation.r		RNA_correlation.r
RNA_from_multiomic_cmeans.R		RNA_from_multiomic_cmeans.R
RNAfuzzy_clustering.R		RNAfuzzy_clustering.R
RSEM4Mike		RSEM4Mike
RSEM4Mike.sh		RSEM4Mike.sh
RSEM_gcloud.sh		RSEM_gcloud.sh
Responders_factor_analysis.R		Responders_factor_analysis.R
SBA_deseq2_iterations.r		SBA_deseq2_iterations.r
SBA_deseq2_iterations_scg.R		SBA_deseq2_iterations_scg.R
SavingRdataFiles.R		SavingRdataFiles.R
Saving_Data_for_Supervised.R		Saving_Data_for_Supervised.R
SingleOmicCorrelations.R		SingleOmicCorrelations.R
SlurmDESeqFiberWeek.sh		SlurmDESeqFiberWeek.sh
Star.sh		Star.sh
Subdividing_taxa.R		Subdividing_taxa.R
Supervised_Clustering.R		Supervised_Clustering.R
Ternary.R		Ternary.R
TernaryPlotsOnly.R		TernaryPlotsOnly.R
TestingVariablesDecomp.R		TestingVariablesDecomp.R
Testing_differences_in_genefamilies.R		Testing_differences_in_genefamilies.R
Untitled.R		Untitled.R
Utils.r		Utils.r
adding_master_metadata.r		adding_master_metadata.r
bam2fastq.sh		bam2fastq.sh
concatenating-human-stool-library-1.sh		concatenating-human-stool-library-1.sh
concatenation.sh		concatenation.sh
contenation.sh		contenation.sh
create_instances.sh		create_instances.sh
creating_samples_metadata.py		creating_samples_metadata.py
creating_samples_metadata_renamed.py		creating_samples_metadata_renamed.py
deseq_baseline_scg.R		deseq_baseline_scg.R
factor_and_lda_tutorials.R		factor_and_lda_tutorials.R
fiber_week_B.sh		fiber_week_B.sh