Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

using the well-known json dict instead of manually providing multiple… #7

Merged
merged 23 commits into from
Jun 5, 2024

Commits on Apr 16, 2024

  1. qiita.slurm_resource_allocations (qiita-spots#3391)

    * Update CHANGELOG.md
    
    * add db changes including fix qiita-spots#3368
    antgonza authored Apr 16, 2024
    Configuration menu
    Copy the full SHA
    8660043 View commit details
    Browse the repository at this point in the history
  2. Pac bio smrt new instruments (qiita-spots#3390)

    * Update CHANGELOG.md
    
    * PacBio_SMRT new instruments
    antgonza authored Apr 16, 2024
    Configuration menu
    Copy the full SHA
    fe50614 View commit details
    Browse the repository at this point in the history

Commits on Apr 22, 2024

  1. Adding current human filtering flag to prep_template (qiita-spots#3395)

    * Update CHANGELOG.md
    
    * adding current_human_filtering to PrepTemplate
    antgonza authored Apr 22, 2024
    Configuration menu
    Copy the full SHA
    28d7191 View commit details
    Browse the repository at this point in the history

Commits on Apr 23, 2024

  1. Fix 3352 (qiita-spots#3397)

    * Update CHANGELOG.md
    
    * fix qiita-spots#3352
    antgonza authored Apr 23, 2024
    Configuration menu
    Copy the full SHA
    8b833d3 View commit details
    Browse the repository at this point in the history
  2. Fix 3387 (qiita-spots#3398)

    * Update CHANGELOG.md
    
    * fix qiita-spots#3387
    antgonza authored Apr 23, 2024
    Configuration menu
    Copy the full SHA
    b4a7caf View commit details
    Browse the repository at this point in the history
  3. Fix 3376 (qiita-spots#3399)

    * Update CHANGELOG.md
    
    * fix qiita-spots#3376
    antgonza authored Apr 23, 2024
    Configuration menu
    Copy the full SHA
    68fa3e2 View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2024

  1. Update qiita prep temp06182020 (qiita-spots#3400)

    * Update CHANGELOG.md
    
    * updating QiitaPrepTemp06182020.xlsx
    antgonza authored Apr 26, 2024
    Configuration menu
    Copy the full SHA
    6d27147 View commit details
    Browse the repository at this point in the history
  2. add reprocess_job_id to PrepTemplate (qiita-spots#3396)

    * Update CHANGELOG.md
    
    * add reprocess_job_id to PrepTemplate
    antgonza authored Apr 26, 2024
    Configuration menu
    Copy the full SHA
    748126a View commit details
    Browse the repository at this point in the history

Commits on May 7, 2024

  1. Clean plugins (qiita-spots#3403)

    * Update CHANGELOG.md
    
    * clean plugins
    
    * patch 54.sql
    
    * fix Internal Qiita jobs
    
    * sample_template.generate_files
    
    * rm extra filepath
    
    * qiita.filepath_filepath_id_seq
    
    * basedir_len
    
    * basedir_len * 2
    
    * basedir_len * 3
    
    * get_db_files_base_dir
    
    * address @charles-cowart comment
    antgonza authored May 7, 2024
    Configuration menu
    Copy the full SHA
    7b9cb33 View commit details
    Browse the repository at this point in the history
  2. adding test_db_sql (qiita-spots#3405)

    * Update CHANGELOG.md
    
    * clean plugins
    
    * patch 54.sql
    
    * fix Internal Qiita jobs
    
    * sample_template.generate_files
    
    * rm extra filepath
    
    * qiita.filepath_filepath_id_seq
    
    * basedir_len
    
    * basedir_len * 2
    
    * basedir_len * 3
    
    * get_db_files_base_dir
    
    * adding test_db_sql
    
    * missing `
    
    * echo $QIITA_CONFIG_FP
    
    * -p 32768
    
    * -l localhost
    
    * pgport
    
    * testing 1
    
    * testing 2
    
    * localhost
    
    * testing 3
    
    * -h localhost
    
    * -W
    
    * PGPASSWORD
    
    * doc
    
    * flake8
    
    * mods after chatting with @charles-cowart
    
    * exit 1
    
    * "$row_counts"
    
    * #
    
    * `echo $row_counts`
    
    * full tests
    antgonza authored May 7, 2024
    Configuration menu
    Copy the full SHA
    7c7600e View commit details
    Browse the repository at this point in the history

Commits on May 16, 2024

  1. ext documentation nginx mod_zip (qiita-spots#3409)

    * Update CHANGELOG.md
    
    * Note about missing mod_zip
    
    As I wasted too much time in figuring out what's wrong with anonymous link downloads, I thought it would be handy to summarize my lessons learned for others
    
    * add git
    
    "secretly" adding git as an Ubuntu package to be installed in a fresh system. Git later referred to for obtaining the Qiita sources.
    
    ---------
    
    Co-authored-by: Antonio Gonzalez <[email protected]>
    sjanssen2 and antgonza authored May 16, 2024
    Configuration menu
    Copy the full SHA
    6ac8ee8 View commit details
    Browse the repository at this point in the history
  2. Fix 3381 (qiita-spots#3408)

    * Update CHANGELOG.md
    
    * fix qiita-spots#3381
    
    * fallback
    
    * rm qiimp from test
    antgonza authored May 16, 2024
    Configuration menu
    Copy the full SHA
    c0cdb4b View commit details
    Browse the repository at this point in the history

Commits on May 21, 2024

  1. Test util db (qiita-spots#3406)

    * Update to DB qiita.slurm_resource_allocations
    
    * connected tests to database
    
    * Update util.py
    
    * debugging changes to test
    
    * Update test_util.py
    
    * Update test_util.py
    
    * Tests update
    
    * Update test_meta_util.py
    
    * Updates to @antgonza comments
    
    * Updates to @charles-cowart comments
    Gossty authored May 21, 2024
    Configuration menu
    Copy the full SHA
    55e460e View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2024

  1. Fix msg admin none (qiita-spots#3410)

    * Update CHANGELOG.md
    
    * fix admin processing_job msg None
    
    * update keys
    antgonza authored Jun 4, 2024
    Configuration menu
    Copy the full SHA
    1ffd9a0 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ffe1ec8 View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2024

  1. using the well-known json dict instead of manually providing multiple…

    … API endpoints through the config file
    sjanssen2 committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    c9d413a View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    6bfafcb View commit details
    Browse the repository at this point in the history
  3. flake8

    sjanssen2 committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    9a5e7cc View commit details
    Browse the repository at this point in the history
  4. flake8

    sjanssen2 committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    b2fc279 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    5cc0896 View commit details
    Browse the repository at this point in the history
  6. add OIDC logo

    sjanssen2 committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    949084d View commit details
    Browse the repository at this point in the history
  7. revert to dev branch

    sjanssen2 committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    c3b040b View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    d96bbae View commit details
    Browse the repository at this point in the history