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using the well-known json dict instead of manually providing multiple… #7

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merged 23 commits into from
Jun 5, 2024

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… API endpoints through the config file

antgonza and others added 23 commits April 16, 2024 12:34
* Update CHANGELOG.md

* add db changes including fix qiita-spots#3368
* Update CHANGELOG.md

* PacBio_SMRT new instruments
* Update CHANGELOG.md

* adding current_human_filtering to PrepTemplate
* Update CHANGELOG.md

* fix qiita-spots#3352
* Update CHANGELOG.md

* fix qiita-spots#3387
* Update CHANGELOG.md

* fix qiita-spots#3376
* Update CHANGELOG.md

* updating QiitaPrepTemp06182020.xlsx
* Update CHANGELOG.md

* add reprocess_job_id to PrepTemplate
* Update CHANGELOG.md

* clean plugins

* patch 54.sql

* fix Internal Qiita jobs

* sample_template.generate_files

* rm extra filepath

* qiita.filepath_filepath_id_seq

* basedir_len

* basedir_len * 2

* basedir_len * 3

* get_db_files_base_dir

* address @charles-cowart comment
* Update CHANGELOG.md

* clean plugins

* patch 54.sql

* fix Internal Qiita jobs

* sample_template.generate_files

* rm extra filepath

* qiita.filepath_filepath_id_seq

* basedir_len

* basedir_len * 2

* basedir_len * 3

* get_db_files_base_dir

* adding test_db_sql

* missing `

* echo $QIITA_CONFIG_FP

* -p 32768

* -l localhost

* pgport

* testing 1

* testing 2

* localhost

* testing 3

* -h localhost

* -W

* PGPASSWORD

* doc

* flake8

* mods after chatting with @charles-cowart

* exit 1

* "$row_counts"

* #

* `echo $row_counts`

* full tests
* Update CHANGELOG.md

* Note about missing mod_zip

As I wasted too much time in figuring out what's wrong with anonymous link downloads, I thought it would be handy to summarize my lessons learned for others

* add git

"secretly" adding git as an Ubuntu package to be installed in a fresh system. Git later referred to for obtaining the Qiita sources.

---------

Co-authored-by: Antonio Gonzalez <[email protected]>
* Update CHANGELOG.md

* fix qiita-spots#3381

* fallback

* rm qiimp from test
* Update to DB qiita.slurm_resource_allocations

* connected tests to database

* Update util.py

* debugging changes to test

* Update test_util.py

* Update test_util.py

* Tests update

* Update test_meta_util.py

* Updates to @antgonza comments

* Updates to @charles-cowart comments
* Update CHANGELOG.md

* fix admin processing_job msg None

* update keys
@sjanssen2 sjanssen2 merged commit a491870 into auth_oidc Jun 5, 2024
4 checks passed
@sjanssen2 sjanssen2 deleted the auth_oidc_wellknown branch June 6, 2024 08:57
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3 participants