BioAT

the Bioinformatic Analysis Tools

About bioat

Bref: bioat, a python package & command line toolkit for Bioinformatics and data science!

Home: https://github.com/hermanzhaozzzz/bioat

License: Apache-2.0

Name	Downloads	Version	Platforms	Test

About author

Name: 赵华男 | Huanan Herman Zhao | EMail: hermanzhaozzzz AT gmail.com | Zhihu | BLOG

Installation

# supported platform: Linux / MacOS (intel & arm64) / Windows
pip install --upgrade bioat
# use conda
conda install -c conda-forge bioat

Usage

# list commands
bioat list
# check version
bioat version
# check information about bioat
bioat about

# example usage
bioat bam remove_clip --help
samtools view -h test_sorted_n.bam | bioat bam remove_clip | tail

circos plot

Doc

See Doc