.gitignore

##############
# this project
##############
test_outfiles/
docs/html/
docs/doctrees/
staged-recipes/
conda-recipe/
bioat-feedstock/
##############
# common project
##############
# python cache
**/__pycache__/
**/.pytest_cache/
**/dist/
# spyder
**/.spyproject/

# jupyterlab meta
**/.ipynb_checkpoints/

# pycharm meta
**/.idea/
**/.run/
_Deparsed_XSubs.pm

# vscode
**/.vscode/

# Rstudio history
**/.Rhistory

# macos meta
**/.DS_Store
**/.Trash/

# snakemake configure
**/.snakemake/
samples.json

# HEXO public
/public/
/.deploy_git/

# TexPad temp
/.texpadtmp/

# Polaris slurm system
sna*.err
sna*.out
job.srp*
slurm-*.out

# Others
/tmpdir_*/
.localized

# Sphinx文档相关
docs/_build/
docs/_static/
docs/_templates/
docs/*.rst
docs/*.md

# Git相关
*.orig
*.rej
*.patch
*.diff

# 缓存和日志
.ruff_cache/
*.log

# 配置的运行目录
.run/