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20 Open 74 Closed
20 Open 74 Closed
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Issues list

Automatically gathering relevant metadata for an issue report
#192 opened Oct 31, 2024 by cnluzon
Optimize minute environment setup
#190 opened Jul 4, 2024 by cnluzon
3
Rename percentage duplication field
#187 opened Apr 5, 2024 by cnluzon
Adjust INRC barplots size for large runs
#177 opened Feb 14, 2024 by cnluzon
Make minute generate bowtie2 index if no index is found
#162 opened Feb 22, 2023 by cnluzon
1
Fragment length parameter not so necessary for bigWig generation
#161 opened Jan 18, 2023 by cnluzon
BAM file remove unmapped reads
#156 opened Aug 3, 2022 by simonelsasser
wrapped snakemake run on cluster mode inherits max ncores from scheduler process
#155 opened Jul 5, 2022 by cnluzon
Add copy number analysis for input
#124 opened Oct 27, 2021 by simonelsasser
2
option to regenerate bw files with custom parameters
#106 opened May 20, 2021 by simonelsasser
Group jobs have non-identificative names
#96 opened Dec 4, 2020 by cnluzon
BigWig computation rules are slow
#89 opened Nov 17, 2020 by marcelm
2
Trimming adaptor sequences counts
#83 opened Nov 1, 2020 by cnluzon
3
Can the pipeline run as a single cluster job?
#80 opened Oct 27, 2020 by marcelm
13
Map reads to rodrep
#63 opened Sep 25, 2020 by cnluzon
2
Group wise graphical output
#42 opened Jun 5, 2020 by simonelsasser
Estimate specific adaptor content from FASTQ files
#21 opened May 22, 2020 by cnluzon
Extra QC: deepTools PCA and fingerprint plots of alignment files
#15 opened Apr 27, 2020 by cnluzon
Run bwtool summary
#12 opened Apr 8, 2020 by marcelm
4
Get insert sizes for normalization from insert size metrics
#10 opened Apr 8, 2020 by marcelm
2
ProTip! Exclude everything labeled bug with -label:bug.