ds_prep

Contains data preparation and preprocessing scripts for the Courtois-Neuromod project.

• mri
  • convert
    • heuristics
  • prep
    • fill_intended_for
    • deface_anat
• derivatives
  • init_derivative_datalad (carefully set annex.largefiles, heudiconv exclude tsv by default, but fmriprep confounds are huge)
  • fmriprep
  • qc
    • dashqc
    • fitlins to produce basic contrasts
• stimulus
  • video
    • scene_cuts
    • annotation (pliers graphs to events)
  • hcptrt
    • convert eprime to "rich" tsv files
    • apply pliers on language task audio, images
  • games (gym bk2 to keypresses in events.tsv)
• physio
  • convert_segment
  • preproc
  • extract
    • heart_rate
    • resp
    • ...
• eyetracking
  • convert/extract