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Fix upper bound #104

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Fix upper bound

Fix upper bound #104

Workflow file for this run

.github/workflows/rust.yml at bcae0be
name: build
on:
push:
# Branches that sound like default
branches:
- trunk
- crates-io
tags:
- '[0-9]+.[0-9]+.[0-9]+rc[0-9]+'
- '[0-9]+.[0-9]+.[0-9]+'
# Don't run tests, when only textfiles were modified
paths-ignore:
- "COPYRIGHT"
- "LICENSE-*"
- "**.md"
- "**.txt"
- "**readme.yml"
- "**tpl"
pull_request:
branches:
- trunk
- crates-io
paths-ignore:
- "COPYRIGHT"
- "LICENSE-*"
- "**.md"
- "**.txt"
- "**readme.yml"
- "**tpl"
jobs:
rustfmt:
name: Rustfmt
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
components: rustfmt, clippy
- uses: actions-rs/cargo@v1
with:
command: fmt
args: --all -- --check
- uses: actions-rs/cargo@v1
with:
command: clippy
# see https://github.com/rust-lang/rust-clippy/issues/8971
args: -- -D warnings -A clippy::borrow_deref_ref
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Install Rust
uses: hecrj/setup-rust-action@v1
- name: Build
run: cargo build --verbose
- name: Run tests
run: cargo test --verbose --no-default-features --features=sabiork
check:
name: Code coverage
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Install stable toolchain
uses: actions-rs/toolchain@v1
with:
toolchain: nightly
override: true
- name: Run cargo-tarpaulin
uses: actions-rs/[email protected]
with:
version: '0.18.3'
args: '--count --frozen --no-default-features --doc --tests -- --test-threads 1'
- name: Upload to codecov.io
uses: codecov/[email protected]
with:
token: ${{secrets.CODECOV_TOKEN}}
pytest:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Install stable toolchain
uses: actions-rs/toolchain@v1
with:
toolchain: stable
override: true
- name: Install Python 3.8
uses: actions/setup-python@v1
with:
python-version: 3.8
- name: Install python CI dependencies
run: |
python -m pip install --upgrade pip
pip install maturin pytest cobra
- name: Install with maturin
run: |
maturin build
pip install .
- name: Run tests with pytest
run: pytest
rust-publish:
if: startsWith(github.ref, 'refs/tags/')
needs: build
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v1
- uses: actions-rs/toolchain@v1
with:
toolchain: nightly
override: true
- name: Publish on crates.io
run: |
cargo login ${{ secrets.CARGO }}
cargo publish
python-publish:
if: startsWith(github.ref, 'refs/tags/')
needs: build
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
python-version: [3.6, 3.7, 3.8, 3.9]
os: [ubuntu-latest, macos-latest, windows-latest]
steps:
- uses: actions/checkout@v1
- uses: actions/setup-python@v1
with:
python-version: ${{ matrix.python-version }}
- name: Install latest nightly
uses: actions-rs/toolchain@v1
with:
toolchain: nightly
override: true
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install poetry
poetry install
- name: Build Python package
run: poetry run maturin build --release --no-sdist --strip --interpreter python${{matrix.python-version}}
- name: List wheels
if: matrix.os == 'windows-latest'
run: dir target\wheels\
- name: List wheels
if: matrix.os != 'windows-latest'
run: find ./target/wheels/
- name: Install wheels
if: matrix.os == 'windows-latest'
run: pip install --find-links=target\wheels rust_sbml
- name: Install wheels
if: matrix.os != 'windows-latest'
run: pip install target/wheels/rust_sbml*.whl
# - name: Release
# uses: softprops/action-gh-release@v1
# if: startsWith(github.ref, 'refs/tags/')
# with:
# files: target/wheels/rust_sbml*.whl
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: PyPi publish
env:
MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
run: poetry run maturin publish --username ${{ secrets.PYPI_USER }} --interpreter python${{matrix.python-version}}