rust.yml

name: build

on:
  push:
    # Branches that sound like default
    branches:
      - trunk
      - crates-io
    tags:
      - '[0-9]+.[0-9]+.[0-9]+rc[0-9]+'
      - '[0-9]+.[0-9]+.[0-9]+'
    # Don't run tests, when only textfiles were modified
    paths-ignore:
      - "COPYRIGHT"
      - "LICENSE-*"
      - "**.md"
      - "**.txt"
      - "**readme.yml"
      - "**tpl"
  pull_request:
    branches:
      - trunk
      - crates-io
    paths-ignore:
      - "COPYRIGHT"
      - "LICENSE-*"
      - "**.md"
      - "**.txt"
      - "**readme.yml"
      - "**tpl"

jobs:
  rustfmt:
    name: Rustfmt
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - uses: actions-rs/toolchain@v1
        with:
          profile: minimal
          toolchain: stable
          override: true
          components: rustfmt, clippy
      - uses: actions-rs/cargo@v1
        with:
          command: fmt
          args: --all -- --check
      - uses: actions-rs/cargo@v1
        with:
          command: clippy
          # see https://github.com/rust-lang/rust-clippy/issues/8971
          args: -- -D warnings -A clippy::borrow_deref_ref
  build:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: Install Rust
        uses: hecrj/setup-rust-action@v1
      - name: Build
        run: cargo  build --verbose
      - name: Run tests
        run: cargo test --verbose --no-default-features --features=sabiork 
  check:
    name: Code coverage
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Install stable toolchain
        uses: actions-rs/toolchain@v1
        with:
          toolchain: nightly
          override: true

      - name: Run cargo-tarpaulin
        uses: actions-rs/tarpaulin@v0.1
        with:
          version: '0.18.3'
          args: '--count --frozen --no-default-features  --doc --tests -- --test-threads 1'

      - name: Upload to codecov.io
        uses: codecov/codecov-action@v1.0.2
        with:
          token: ${{secrets.CODECOV_TOKEN}}
  pytest:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v2

      - name: Install stable toolchain
        uses: actions-rs/toolchain@v1
        with:
          toolchain: stable
          override: true

      - name: Install Python 3.8
        uses: actions/setup-python@v1
        with:
          python-version: 3.8

      - name: Install python CI dependencies
        run: |
          python -m pip install --upgrade pip
          pip install maturin pytest cobra

      - name: Install with maturin
        run: |
          maturin build
          pip install .

      - name: Run tests with pytest
        run: pytest
  rust-publish:
      if: startsWith(github.ref, 'refs/tags/')
      needs: build
      runs-on: ubuntu-latest
      steps:
        - uses: actions/checkout@v1

        - uses: actions-rs/toolchain@v1
          with:
            toolchain: nightly
            override: true

        - name: Publish on crates.io
          run: |
            cargo login ${{ secrets.CARGO }}
            cargo publish
  python-publish:
      if: startsWith(github.ref, 'refs/tags/')
      needs: build
      runs-on: ${{ matrix.os }}
      strategy:
        fail-fast: false
        matrix:
          python-version: [3.6, 3.7, 3.8, 3.9]
          os: [ubuntu-latest, macos-latest, windows-latest]
      steps:
        - uses: actions/checkout@v1

        - uses: actions/setup-python@v1
          with:
            python-version: ${{ matrix.python-version }}

        - name: Install latest nightly
          uses: actions-rs/toolchain@v1
          with:
            toolchain: nightly
            override: true

        - name: Install dependencies
          run: |
            python -m pip install --upgrade pip
            pip install poetry
            poetry install

        - name: Build Python package
          run: poetry run maturin build --release --no-sdist --strip --interpreter python${{matrix.python-version}}

        - name: List wheels
          if: matrix.os == 'windows-latest'
          run: dir target\wheels\

        - name: List wheels
          if:  matrix.os != 'windows-latest'
          run: find ./target/wheels/

        - name: Install wheels
          if:  matrix.os == 'windows-latest'
          run: pip install --find-links=target\wheels rust_sbml

        - name: Install wheels
          if:  matrix.os != 'windows-latest'
          run: pip install target/wheels/rust_sbml*.whl

        # - name: Release
        #   uses: softprops/action-gh-release@v1
        #   if: startsWith(github.ref, 'refs/tags/')
        #   with:
        #     files: target/wheels/rust_sbml*.whl
        #   env:
        #     GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

        - name: PyPi publish
          env:
            MATURIN_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
          run: poetry run maturin publish --username ${{ secrets.PYPI_USER }} --interpreter python${{matrix.python-version}}