build: fix sklearn/hdbscan versions to account for TypeError bug

PNNL-CompBio · May 28, 2024 · 0de98d7 · 0de98d7
1 parent 163239c
commit 0de98d7
Show file tree

Hide file tree

Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/environment.yml b/environment.yml
@@ -15,11 +15,11 @@ dependencies:
   - scipy
   - pandas == 1.4.2
   - seaborn
-  - scikit-learn
+  - scikit-learn == 1.2.2
   - snakemake == 7.0
   - tabulate == 0.8.10
   - umap-learn
-  - hdbscan
+  - hdbscan == 0.8.29  # see: https://stackoverflow.com/questions/76714347/hdbscan-error-typeerror-numpy-float64-object-cannot-be-interpreted-as-an-int
   - pip
   - pip:
       - -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer
diff --git a/environment_BSF.yml b/environment_BSF.yml
@@ -15,11 +15,11 @@ dependencies:
   - scipy
   - pandas
   - seaborn
-  - scikit-learn
+  - scikit-learn == 1.2.2
   - snakemake == 7.0
   - tabulate == 0.8.10
   - umap-learn
-  - hdbscan
+  - hdbscan == 0.8.29  # see: https://stackoverflow.com/questions/76714347/hdbscan-error-typeerror-numpy-float64-object-cannot-be-interpreted-as-an-int
   - pip
   - pip:
       - -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer

diff --git a/environment_Windows.yml b/environment_Windows.yml
@@ -15,11 +15,11 @@ dependencies:
   - scipy
   - pandas
   - seaborn
-  - scikit-learn
+  - scikit-learn == 1.2.2
   - snakemake-minimal == 7.0
   - tabulate == 0.8.10
   - umap-learn
-  - hdbscan >= 0.8.29
+  - hdbscan == 0.8.29  # see: https://stackoverflow.com/questions/76714347/hdbscan-error-typeerror-numpy-float64-object-cannot-be-interpreted-as-an-int
   - pip
   - pip:
       - snekmer