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35 Open 38 Closed
35 Open 38 Closed
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Issues list

sc_trim_barcode problem in single-end data
#138 opened Dec 11, 2021 by MiladAD123NGS
1
Read structure for CELseq protocol swaps R1 and R2
#137 opened Sep 15, 2021 by mcmero
scater::calculateQCMetrics is deprepated
#136 opened Aug 28, 2021 by bernt-matthias
1
automatically load biomaRt?
#135 opened Aug 27, 2021 by bernt-matthias
sc-exon-mapping strand checking
#134 opened Aug 9, 2021 by parsboy66
2
sc_demultiplex empty output
#131 opened Feb 1, 2021 by cpattaroni
1
Data processing for Smart-seq2 data
#128 opened Oct 8, 2020 by arshiyaakeel
transcript ID not found
#123 opened Oct 27, 2019 by AmaliT
1
All data (including example data) producing gene count matrix with 0s
#122 opened Jul 10, 2019 by IzzyJRussell
5
gff3 gene ID replaced by random numbers in gene_count.csv table
#121 opened Jul 3, 2019 by audreystott
1
Setting up a usage gallery
#111 opened Mar 21, 2019 by LTLA
2
check bam tag in function enhancement
#107 opened Dec 18, 2018 by LuyiTian
@LuyiTian
Support for GRangesList
#103 opened Oct 26, 2018 by Shians
Support for BCLs
#101 opened Oct 3, 2018 by AMChalkie
4
Meaning of UMI_cor = 2 in sc_gene_counting()
#93 opened Aug 27, 2018 by PeteHaitch
2
GO filter ID and other BioMart issues during calculate_QC_metrics()
#91 opened Aug 27, 2018 by okorn-src
1
Why do we need to respecify barcode information in sc_exon_mapping?
#88 opened Aug 23, 2018 by LTLA
4
Support pre-loaded annotation data structures
#87 opened Aug 22, 2018 by LTLA
8
Multiple fastq files (multiple samples)
#83 opened Jul 23, 2018 by gk-bioin4m8x
5
Convenience Parameter Specification for Popular Assays
#80 opened Jul 4, 2018 by DarioS
2
Vignette is Untidy
#78 opened Jul 3, 2018 by DarioS
update the cell barcode demultiplex method enhancement
#67 opened May 2, 2018 by LuyiTian
@LuyiTian
do not put all csv string in memory enhancement
#66 opened May 2, 2018 by LuyiTian
@LuyiTian
4
We should rethink is_outlier
#61 opened Apr 16, 2018 by Shians
segfault: Memory not mapped
#60 opened Mar 16, 2018 by MingBit
3
ProTip! What’s not been updated in a month: updated:<2024-10-08.