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scater::calculateQCMetrics is deprepated #136

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bernt-matthias opened this issue Aug 28, 2021 · 0 comments
Open

scater::calculateQCMetrics is deprepated #136

bernt-matthias opened this issue Aug 28, 2021 · 0 comments

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@bernt-matthias
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With the current scater package the following error appears:

Error: 'calculateQCMetrics' is defunct.
Use 'perCellQCMetrics' instead.

scPipe/inst/extdata/report_template.Rmd

Line 196 in a9948cf

sce_qc <- calculateQCMetrics(sce_qc)

OliverVoogd added a commit to OliverVoogd/scPipe that referenced this issue Dec 21, 2021
@OliverVoogd
Update report_template.Rmd
dc3f2b4 
LuyiTian#136 changed defunct function name
@OliverVoogd OliverVoogd mentioned this issue Dec 21, 2021
Merged
@PeteHaitch PeteHaitch mentioned this issue Feb 16, 2022
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Port #140 from devel branch to fix #136 in release branch
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@bernt-matthias