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failed to run `@example` block in src/input-julia.md:190-205 ```@example julia using MCMCChains using StatsPlots plotlyjs() pt = pigeons( target = MyLogPotential(100, 50), reference = MyLogPotential(0, 0), explorer = AutoMALA(default_autodiff_backend = :Enzyme), record = [traces]) samples = Chains(pt) my_plot = StatsPlots.plot(samples) StatsPlots.savefig(my_plot, "julia_posterior_densities_and_traces.html"); samples ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] MCMCChains.Chains(pt::PT{...}) @ PigeonsMCMCChainsExt ~/work/Pigeons.jl/Pigeons.jl/ext/PigeonsMCMCChainsExt/PigeonsMCMCChainsExt.jl:12 [4] top-level scope @ input-julia.md:200 [5] eval @ ./boot.jl:385 [inlined] [6] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [11] with_logger @ ./logging.jl:627 [inlined] [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/input-stan.md:89-103 ```@example stan using MCMCChains using StatsPlots plotlyjs() pt = pigeons( target = stan_unid(100, 50), reference = stan_unid(0, 0), record = [traces]) samples = Chains(pt) my_plot = StatsPlots.plot(samples) StatsPlots.savefig(my_plot, "stan_posterior_densities_and_traces.html"); samples ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] MCMCChains.Chains(pt::PT{...}) @ PigeonsMCMCChainsExt ~/work/Pigeons.jl/Pigeons.jl/ext/PigeonsMCMCChainsExt/PigeonsMCMCChainsExt.jl:12 [4] top-level scope @ input-stan.md:98 [5] eval @ ./boot.jl:385 [inlined] [6] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [11] with_logger @ ./logging.jl:627 [inlined] [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/input-turing.md:79-90 ```@example turing using MCMCChains using StatsPlots plotlyjs() pt = pigeons(target = my_turing_target, record = [traces]) samples = Chains(pt) my_plot = StatsPlots.plot(samples) StatsPlots.savefig(my_plot, "turing_posterior_densities_and_traces.html"); samples ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] MCMCChains.Chains(pt::PT{...}) @ PigeonsMCMCChainsExt ~/work/Pigeons.jl/Pigeons.jl/ext/PigeonsMCMCChainsExt/PigeonsMCMCChainsExt.jl:12 [4] top-level scope @ input-turing.md:85 [5] eval @ ./boot.jl:385 [inlined] [6] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [11] with_logger @ ./logging.jl:627 [inlined] [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-custom-types.md:45-59 ```@example include("../../examples/ising.jl") Pigeons.extract_sample(state::IsingState, log_potential) = copy(vec(state.matrix)) pt = pigeons(target = IsingLogPotential(1.0, 2), record = [traces]) using MCMCChains using StatsPlots samples = Chains(sample_array(pt)) my_plot = StatsPlots.plot(samples) StatsPlots.savefig(my_plot, "posterior_densities_and_traces_ising.html"); nothing # hide ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] top-level scope @ output-custom-types.md:55 [4] eval @ ./boot.jl:385 [inlined] [5] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [6] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [7] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [8] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [9] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [10] with_logger @ ./logging.jl:627 [inlined] [11] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [12] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-mpi-postprocessing.md:39-72 ```@example traces using DynamicPPL using Pigeons using MCMCChains using StatsPlots plotlyjs() # example target: Binomial likelihood with parameter p = p1 * p2 an_unidentifiable_model = Pigeons.toy_turing_unid_target(100, 50) pt_result = pigeons(target = an_unidentifiable_model, # (*) run in two new MPI processes # make sure the MPI processes load DynamicPPL on = ChildProcess(n_local_mpi_processes = 2, dependencies=[DynamicPPL]), # (*) signal that we want the PT object to be # serialized at the end of each round checkpoint = true, n_rounds = 12, # make sure to record the trace # (each machine keeps its own during sampling) record = [traces; round_trip; record_default()]) # (*) load the result across all machines into this interactive node pt = Pigeons.load(pt_result) # collect the statistics and convert to MCMCChains' Chains # to have axes labels matching variable names in Turing and Stan samples = Chains(pt) # create the trace plots my_plot = StatsPlots.plot(samples) StatsPlots.savefig(my_plot, "mpi_posterior_densities_and_traces.html"); nothing # hide ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] MCMCChains.Chains(pt::PT{...}) @ PigeonsMCMCChainsExt ~/work/Pigeons.jl/Pigeons.jl/ext/PigeonsMCMCChainsExt/PigeonsMCMCChainsExt.jl:12 [4] top-level scope @ output-mpi-postprocessing.md:66 [5] eval @ ./boot.jl:385 [inlined] [6] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [11] with_logger @ ./logging.jl:627 [inlined] [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-numerical.md:25-43 ```@example numerical using DynamicPPL using Pigeons using MCMCChains # example target: Binomial likelihood with parameter p = p1 * p2 an_unidentifiable_model = Pigeons.toy_turing_unid_target(100, 50) pt = pigeons( target = an_unidentifiable_model, record = [traces; round_trip; record_default()] ) # collect the statistics and convert to MCMCChains' Chains # to have axes labels matching variable names in Turing and Stan samples = Chains(pt) samples ``` exception = MethodError: no method matching getindex(::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}, ::Int64) Stacktrace: [1] sample_dim_size(pt::PT{...}, chains::Base.Generator{Base.Iterators.Filter{Pigeons.var"#110#111"{PT{...}}, UnitRange{Int64}}, typeof(identity)}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:37 [2] sample_array(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/process_sample.jl:21 [3] MCMCChains.Chains(pt::PT{...}) @ PigeonsMCMCChainsExt ~/work/Pigeons.jl/Pigeons.jl/ext/PigeonsMCMCChainsExt/PigeonsMCMCChainsExt.jl:12 [4] top-level scope @ output-numerical.md:40 [5] eval @ ./boot.jl:385 [inlined] [6] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [11] with_logger @ ./logging.jl:627 [inlined] [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-numerical.md:51-54 ```@example numerical using Statistics m = mean(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ output-numerical.md:53 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-numerical.md:58-60 ```@example numerical m[:p1, :mean] ``` exception = UndefVarError: `m` not defined Stacktrace: [1] top-level scope @ output-numerical.md:59 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-numerical.md:64-66 ```@example numerical hpd(samples, alpha = 0.05) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ output-numerical.md:65 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/output-numerical.md:70-72 ```@example numerical ess(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ output-numerical.md:71 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

No `bibfile`. Did you instantiate `bib = CitationBibliography(bibfile)` and pass `bib` to `makedocs` as an element of the `plugins` keyword argument?