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36 Open 86 Closed
36 Open 86 Closed
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Issues list

latent variables
#138 opened Aug 26, 2024 by Flu09
pbDS(pb, design = mm, contrast = contrast) error
#136 opened Jun 4, 2024 by Jadeapple
2
Multiple Random Effects
#134 opened May 3, 2024 by jgockley62
4
Doubt in sim_mean and ground truth
#131 opened Dec 28, 2023 by cakeinspace
1
limma-voom implementation results in more false positives than expected
#129 opened Nov 9, 2023 by reubenthomas
4
How is the AveExpr in mmDS calculated?
#127 opened Sep 28, 2023 by Lila3141
limma voom cpm values
#126 opened Sep 20, 2023 by AnjaliC4
DP simulated data has inverted logFC and only one bimodal group
#125 opened Aug 14, 2023 by ChristophH
3
pbDS limma-voom method appears to ignore voom weights after computing them
#119 opened Mar 21, 2023 by DarwinAwardWinner
2
Specifying contrasts in MUSCAT mixed models
#118 opened Mar 20, 2023 by ismailelshimy
6
How to do sth like contrast for cell level DE analysis
#117 opened Mar 11, 2023 by pariaaliour
2
MUSCAT Mixed Effects Models and the Cellular Detection Rate
#114 opened Nov 28, 2022 by ismailelshimy
2
A constraint that might not be required in PrepSim
#113 opened Nov 28, 2022 by onahman
2
mm_glmm("nbinom") returns NAs
#111 opened Oct 19, 2022 by Nayrouz109
Possible bug in simData function
#104 opened May 19, 2022 by simonemodolo
Analysing DEG in Spatial visium data
#103 opened May 5, 2022 by vkjain0006
2
possible bug in resDS for some methods
#102 opened Apr 14, 2022 by AnjaliC4
Adding pseudobulk-level covariates defined across cell types, to a DE/DS analysis
#101 opened Apr 13, 2022 by koenvandenberge
1
cannot compute log geometric means Deseq2
#97 opened Feb 19, 2022 by AnjaliC4
2
pbHeatmap error because 't' is not implemented for 'Matrix'
#93 opened Feb 4, 2022 by AnaBVA
3
weighting the samples according to the number of cells
#87 opened Dec 16, 2021 by stkachev
error in dataset simulation: length(class) == 1L is not TRUE
#79 opened Jul 31, 2021 by YiyiChen0328
2
Cell-level analysis: Vst method
#74 opened Jun 30, 2021 by bassanio
4
The p_adj.loc results
#72 opened Jun 24, 2021 by yuyingxie
2
How to speed up 'binom'
#71 opened Jun 24, 2021 by yuyingxie
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