ESCOMP · peverwhee · Dec 20, 2024 · Sep 10, 2024 · Sep 10, 2024 · Sep 12, 2024
diff --git a/.gitmodules b/.gitmodules
@@ -151,28 +151,28 @@ fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
 [submodule "cime"]
 path = cime
 url = https://github.com/ESMCI/cime
-fxtag = cime6.1.41
+fxtag = cime6.1.49
 fxrequired = ToplevelRequired
 fxDONOTUSEurl = https://github.com/ESMCI/cime
 
 [submodule "cmeps"]
 path = components/cmeps
 url = https://github.com/ESCOMP/CMEPS.git
-fxtag = cmeps1.0.22
+fxtag = cmeps1.0.32
 fxrequired = ToplevelRequired
 fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
 
 [submodule "cdeps"]
 path = components/cdeps
 url = https://github.com/ESCOMP/CDEPS.git
-fxtag = cdeps1.0.53
+fxtag = cdeps1.0.61
 fxrequired = ToplevelRequired
 fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
 
 [submodule "share"]
 path = share
 url = https://github.com/ESCOMP/CESM_share
-fxtag = share1.1.2
+fxtag = share1.1.6
 fxrequired = ToplevelRequired
 fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share
 
@@ -193,7 +193,7 @@ fxDONOTUSEurl = https://github.com/ESCOMP/CESM_CICE
 [submodule "clm"]
 path = components/clm
 url = https://github.com/ESCOMP/CTSM
-fxtag = ctsm5.3.002
+fxtag = ctsm5.3.016
 fxrequired = ToplevelRequired
 fxDONOTUSEurl = https://github.com/ESCOMP/CTSM
 

diff --git a/cime b/cime
diff --git a/components/cdeps b/components/cdeps
diff --git a/components/clm b/components/clm
diff --git a/components/cmeps b/components/cmeps
diff --git a/doc/ChangeLog b/doc/ChangeLog
@@ -1,5 +1,142 @@
 ===============================================================
 
+Tag name: cam6_4_048
+Originator(s): jedwards4b, peverwhee
+Date: 20 December 2024
+One-line Summary: Timestamp in rpointer name
+Github PR URL: https://github.com/ESCOMP/CAM/pull/1147
+
+Purpose of changes (include the issue number and title text for each relevant GitHub issue):
+#1146 - Add timestep to rpointer file name
+- Updates to externals, nuopc cap, and cam control code to handle timestamp in
+rpointer file
+
+Describe any changes made to build system: N/A
+
+Describe any changes made to the namelist: N/A
+
+List any changes to the defaults for the boundary datasets: N/A
+
+Describe any substantial timing or memory changes: N/A
+
+Code reviewed by: brian-eaton
+
+List all files eliminated: N/A
+
+List all files added and what they do: N/A
+
+List all existing files that have been modified, and describe the changes:
+M  .gitmodules
+- update externals for rpointer mods
+  - cime6.1.49
+  - cmeps1.0.32
+  - cdeps1.0.61
+  - share1.1.6
+  - ctsm5.3.016
+
+M  src/control/cam_initfiles.F90
+- look for new timestamped rpointer file
+
+M  src/control/cam_restart.F90
+- remove unnecessary conditionals for optional variables
+
+M src/cpl/nuopc/atm_comp_nuopc.F90
+- update variable names coming from coupler
+
+If there were any failures reported from running test_driver.sh on any test
+platform, and checkin with these failures has been OK'd by the gatekeeper,
+then copy the lines from the td.*.status files for the failed tests to the
+appropriate machine below.  All failed tests must be justified.
+
+derecho/intel/aux_cam:
+
+ERC_D_Ln9.f19_f19_mg17.QPC6.derecho_intel.cam-outfrq3s_cosp (Overall: NLFAIL) details:
+ERC_D_Ln9.f19_f19_mg17.QPMOZ.derecho_intel.cam-outfrq3s (Overall: NLFAIL) details:
+ERC_D_Ln9.f19_f19_mg17.QPX2000.derecho_intel.cam-outfrq3s (Overall: NLFAIL) details:
+ERC_D_Ln9.ne16_ne16_mg17.FADIAB.derecho_intel.cam-terminator (Overall: NLFAIL) details:
+ERC_D_Ln9.ne16_ne16_mg17.QPC5HIST.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL) details:
+ERC_D_Ln9_P144x1.ne16pg3_ne16pg3_mg17.QPC6HIST.derecho_intel.cam-outfrq3s_ttrac_usecase (Overall: NLFAIL) details:
+ERC_D_Ln9.T42_T42_mg17.FDABIP04.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL) details:
+ERC_D_Ln9.T42_T42_mg17.FHS94.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL) details:
+ERI_D_Ln18.f45_f45_mg37.QPC41850.derecho_intel.cam-co2rmp_usecase (Overall: NLFAIL) details:
+ERP_D_Ln9.f19_f19_mg17.QPC6.derecho_intel.cam-outfrq9s (Overall: NLFAIL) details:
+ERP_D_Ln9_P64x2.f09_f09_mg17.QSC6.derecho_intel.cam-outfrq9s (Overall: NLFAIL) details:
+ERP_Ld3.f09_f09_mg17.FWHIST.derecho_intel.cam-reduced_hist1d (Overall: NLFAIL) details:
+ERS_Ln9.ne0TESTONLYne5x4_ne0TESTONLYne5x4_mg37.FADIAB.derecho_intel.cam-outfrq3s_refined (Overall: NLFAIL) details:
+SCT_D_Ln7.ne3_ne3_mg37.QPC5.derecho_intel.cam-scm_prep (Overall: NLFAIL) details:
+SCT_D_Ln7.T42_T42_mg17.QPC5.derecho_intel.cam-scm_prep (Overall: NLFAIL) details:
+SMS_D_Ld2.f19_f19_mg17.QPC5HIST.derecho_intel.cam-volc_usecase (Overall: NLFAIL) details:
+SMS_D_Ld5.f19_f19_mg17.PC4.derecho_intel.cam-cam4_port5d (Overall: NLFAIL) details:
+SMS_D_Ln9.f19_f19_mg17.QPC2000climo.derecho_intel.cam-outfrq3s_usecase (Overall: NLFAIL) details:
+SMS_D_Ln9.f19_f19_mg17.QPC5M7.derecho_intel.cam-outfrq9s (Overall: NLFAIL) details:
+SMS_D_Ln9.ne16_ne16_mg17.QPX2000.derecho_intel.cam-outfrq9s (Overall: NLFAIL) details:
+SMS_Ld5.f09_f09_mg17.PC6.derecho_intel.cam-cam6_port_f09 (Overall: NLFAIL) details:
+SMS_Ln9.f09_f09_mg17.F2010climo.derecho_intel.cam-nudging (Overall: NLFAIL) details:
+SMS_Ln9.f09_f09_mg17.FW1850.derecho_intel.cam-reduced_hist3s (Overall: NLFAIL) details:
+SMS_Ln9.f19_f19.F2000climo.derecho_intel.cam-silhs (Overall: NLFAIL) details:
+ - NL diffs due to CMEPS & CTSM external updates
+
+ERP_D_Ln9.ne30pg3_ne30pg3_mg17.FLTHIST.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ld3.ne30pg3_ne30pg3_mg17.FHISTC_MTt4s.derecho_intel.cam-outfrq1d_aoa (Overall: DIFF) details:
+ERP_Lh12.f19_f19_mg17.FW4madSD.derecho_intel.cam-outfrq3h (Overall: DIFF) details:
+ERP_Ln9.C96_C96_mg17.F2000climo.derecho_intel.cam-outfrq9s_mg3 (Overall: DIFF) details:
+ERP_Ln9.f09_f09_mg17.F1850.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.f09_f09_mg17.F2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.f09_f09_mg17.F2010climo.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.f09_f09_mg17.FHIST_BDRD.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.f19_f19_mg17.FWsc1850.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.ne30pg3_ne30pg3_mg17.FCnudged.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERP_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERS_Ln9.f09_f09_mg17.FX2000.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERS_Ln9.f19_f19_mg17.FSPCAMS.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERS_Ln9.f19_f19_mg17.FXSD.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+ERS_Ln9_P288x1.mpasa120_mpasa120.F2000climo.derecho_intel.cam-outfrq9s_mpasa120 (Overall: DIFF) details:
+SMS_D_Ln9.f09_f09_mg17.FCts2nudged.derecho_intel.cam-outfrq9s_leapday (Overall: DIFF) details:
+SMS_D_Ln9.f09_f09_mg17.FCvbsxHIST.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9.f09_f09_mg17.FSD.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s_waccm_ma_mam4 (Overall: DIFF) details:
+SMS_D_Ln9.ne16pg3_ne16pg3_mg17.FX2000.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9.ne30pg3_ne30pg3_mg17.FMTHIST.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_D_Ln9_P1280x1.ne30pg3_ne30pg3_mg17.FHISTC_MTt1s.derecho_intel.cam-outfrq9s_Leung_dust (Overall: DIFF) details:
+SMS_D_Ln9.T42_T42.FSCAMARM97.derecho_intel.cam-outfrq9s (Overall: DIFF) details:
+SMS_Ld1.f09_f09_mg17.FW2000climo.derecho_intel.cam-outfrq1d (Overall: DIFF) details:
+SMS_Ld1.ne30pg3_ne30pg3_mg17.FC2010climo.derecho_intel.cam-outfrq1d (Overall: DIFF) details:
+SMS_Lh12.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq3h (Overall: DIFF) details:
+SMS_Ln9.f19_f19_mg17.FHIST.derecho_intel.cam-outfrq9s_nochem (Overall: DIFF) details:
+SMS_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s_rrtmgp (Overall: DIFF) details:
+ - Diffs due to updated CTSM external
+
+SMS_D_Ln9.f19_f19_mg17.FXHIST.derecho_intel.cam-outfrq9s_amie (Overall: FAIL)
+SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s (Overall: FAIL)
+ - pre-existing failures due to build-namelist error requiring CLM/CTSM external update.
+
+ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s (Overall: FAIL)
+SMS_Ld1.f09_f09_mg17.FCHIST_GC.derecho_intel.cam-outfrq1d (Overall: DIFF)
+ - pre-existing failure due to HEMCO not having reproducible results issues #1018 and #856
+
+derecho/nvhpc/aux_cam:
+ERS_Ln9.ne30pg3_ne30pg3_mg17.F2000dev.derecho_nvhpc.cam-outfrq9s_gpu_default (Overall: DIFF) details:
+ - Diffs due to updated CTSM external
+
+izumi/nag/aux_cam: !!due to izumi being down and the desire to make a CESM alpha
+tag, the izumi tests were not run!! this changelog entry will be updated once
+the tests are run
+
+izumi/gnu/aux_cam: !!due to izumi being down and the desire to make a CESM alpha
+tag, the izumi tests were not run!! this changelog entry will be updated once
+the tests are run
+
+CAM tag used for the baseline comparison tests if different than previous
+tag:
+
+Summarize any changes to answers: answer changes thanks to updated CTSM tag
+- ran derecho intel & nvhpc tests on head of cam_development with ctsm5.3.015 vs baselines for
+this tag and confirmed that there were no DIFFs
+
+===============================================================
+
 Tag name: cam6_4_047
 Originator(s): jedwards4b, fvitt
 Date: 19 November 2024

diff --git a/share b/share
diff --git a/src/control/cam_initfiles.F90 b/src/control/cam_initfiles.F90
@@ -42,10 +42,6 @@ module cam_initfiles
 
 real(r8), public, protected :: scale_dry_air_mass = 0.0_r8 ! Toggle and target avg air mass for MPAS dycore
 
-! The restart pointer file contains name of most recently written primary restart file.
-! The contents of this file are updated by cam_write_restart as new restart files are written.
-character(len=cl), public, protected :: rest_pfile
-
 ! Filename for initial restart file.
 character(len=cl) :: restart_file = ' '
 
@@ -68,16 +64,20 @@ subroutine cam_initfiles_readnl(nlfile)
    use spmd_utils,      only: mpicom, mstrid=>masterprocid, mpir8=>mpi_real8, &
                               mpichar=>mpi_character, mpi_logical
    use cam_instance,    only: inst_suffix
-
+   use filenames,       only: interpret_filename_spec
+
    character(len=*), intent(in) :: nlfile  ! filepath for file containing namelist input
 
    ! Local variables
    integer :: unitn, ierr
-
    character(len=cl)        :: locfn
    logical                  :: filefound
    integer                  :: xtype
    integer(pio_offset_kind) :: slen
+   logical                  :: found
+
+   ! The restart pointer file contains name of most recently written primary restart file.
+   character(len=cl)       :: rest_pfile
 
    character(len=*), parameter :: sub = 'cam_initfiles_readnl'
 
@@ -112,18 +112,26 @@ subroutine cam_initfiles_readnl(nlfile)
    call mpi_bcast(scale_dry_air_mass, 1, mpir8, mstrid, mpicom, ierr)
    if (ierr /= 0) call endrun(sub//": ERROR: mpi_bcast: scale_dry_air_mass")
 
-   ! Set pointer file name based on instance suffix
-   rest_pfile = './rpointer.atm' // trim(inst_suffix)
-
    ! Set name of primary restart file
    if (restart_run) then
       ! Read name of restart file from pointer file
       if (masterproc) then
+         rest_pfile = interpret_filename_spec("rpointer.cam"//trim(inst_suffix)//".%y-%m-%d-%s", prev=.true.)
+         inquire(file=trim(rest_pfile),exist=found)
+         if(.not. found) then
+            write(iulog, "INFO : rpointer file "//trim(rest_pfile)//" not found.")
+            rest_pfile = "rpointer.cam"//trim(inst_suffix)
+            write(iulog, "  Try looking for "//trim(rest_pfile)//" ...")
+            inquire(file=trim(rest_pfile),exist=found)
+            if(.not. found) then
+               call endrun(sub // ': ERROR: rpointer file: '//trim(rest_pfile) // ' not found')
+            endif
+         endif
          unitn = getunit()
          call opnfil(rest_pfile, unitn, 'f', status="old")
          read (unitn, '(a)', iostat=ierr) restart_file
          if (ierr /= 0) then
-            call endrun(sub // ': ERROR: reading rpointer file')
+            call endrun(sub // ': ERROR: reading rpointer file: '//trim(rest_pfile))
          end if
          close(unitn)
          call freeunit(unitn)

diff --git a/src/control/cam_restart.F90 b/src/control/cam_restart.F90
@@ -106,12 +106,8 @@ subroutine cam_write_restart(cam_in, cam_out, dyn_out, pbuf2d, &
    ! (%c = caseid, $y = year, $m = month, $d = day, $s = seconds in day, %t = number)
    rfilename_spec = '%c.cam' // trim(inst_suffix) //'.r.%y-%m-%d-%s.nc'
 
-   if (present(yr_spec).and.present(mon_spec).and.present(day_spec).and.present(sec_spec)) then
-      fname = interpret_filename_spec( rfilename_spec, &
-              yr_spec=yr_spec, mon_spec=mon_spec, day_spec=day_spec, sec_spec= sec_spec )
-   else
-      fname = interpret_filename_spec( rfilename_spec )
-   end if
+   fname = interpret_filename_spec( rfilename_spec, &
+        yr_spec=yr_spec, mon_spec=mon_spec, day_spec=day_spec, sec_spec= sec_spec )
 
    call cam_pio_createfile(fh, trim(fname), 0)
    ierr = cam_pio_set_fill(fh)
@@ -132,38 +128,39 @@ subroutine cam_write_restart(cam_in, cam_out, dyn_out, pbuf2d, &
    call ionosphere_write_restart(fh)
    call write_restart_physics(fh, cam_in, cam_out, pbuf2d)
 
-   if (present(yr_spec).and.present(mon_spec).and.&
-      present(day_spec).and.present(sec_spec)) then
-      call write_restart_history(fh, yr_spec=yr_spec, mon_spec=mon_spec, &
-                                 day_spec=day_spec, sec_spec= sec_spec )
-   else
-      call write_restart_history(fh)
-   end if
+   call write_restart_history(fh, yr_spec=yr_spec, mon_spec=mon_spec, &
+        day_spec=day_spec, sec_spec= sec_spec )
 
    ! Close the primary restart file
    call pio_closefile(fh)
 
    ! Update the restart pointer file
-   call write_rest_pfile(fname)
+   call write_rest_pfile(fname, yr_spec=yr_spec, mon_spec=mon_spec, &
+                                 day_spec=day_spec, sec_spec= sec_spec )
 
 end subroutine cam_write_restart
 
 !========================================================================================
 
-subroutine write_rest_pfile(restart_file)
+subroutine write_rest_pfile(restart_file, yr_spec, mon_spec, day_spec, sec_spec)
 
    ! Write the restart pointer file
-
-   use cam_initfiles, only: rest_pfile
-
+   use cam_instance,     only: inst_suffix
+   use filenames,        only: interpret_filename_spec
    character(len=*), intent(in) :: restart_file
+   integer,       optional, intent(in) :: yr_spec         ! Simulation year
+   integer,       optional, intent(in) :: mon_spec        ! Simulation month
+   integer,       optional, intent(in) :: day_spec        ! Simulation day
+   integer,       optional, intent(in) :: sec_spec        ! Seconds into current simulation day
 
    integer :: nsds, ierr
+   character(len=CL) :: rest_pfile
    character(len=*), parameter :: sub='write_rest_pfile'
    !---------------------------------------------------------------------------
 
    if (masterproc) then
-
+      rest_pfile = interpret_filename_spec('rpointer.cam'//trim(inst_suffix)//'.'//'%y-%m-%d-%s',&
+           yr_spec=yr_spec, mon_spec=mon_spec, day_spec=day_spec, sec_spec= sec_spec )
       nsds = getunit()
       call opnfil(rest_pfile, nsds, 'f')
       rewind nsds
+33 −6		CIME/SystemTests/eri.py
+6 −7		CIME/SystemTests/err.py
+6 −0		CIME/SystemTests/ers.py
+6 −0		CIME/SystemTests/restart_tests.py
+80 −9		CIME/SystemTests/system_tests_common.py
+104 −26		CIME/XML/env_batch.py
+18 −0		CIME/XML/generic_xml.py
+16 −13		CIME/case/case.py
+10 −1		CIME/case/case_run.py
+63 −45		CIME/case/case_st_archive.py
+4 −3		CIME/case/case_submit.py
+6 −1		CIME/case/check_input_data.py
+1 −3		CIME/data/config/config_tests.xml
+1 −1		CIME/data/config/xml_schemas/config_workflow.xsd
+9 −0		CIME/get_timing.py
+8 −1		CIME/hist_utils.py
+1 −1		CIME/non_py/cprnc
+15 −3		CIME/tests/test_unit_system_tests.py
+4 −0		CIME/tests/test_unit_system_tests_mvk.py
+165 −2		CIME/tests/test_unit_xml_env_batch.py
+1 −0		CIME/tests/test_unit_xml_tests.py
+8 −4		CIME/utils.py
+1 −2		CIME/wait_for_tests.py
+3 −0		cime_config/stream_cdeps.py
+61 −77		datm/atm_comp_nuopc.F90
+4 −2		datm/cime_config/config_component.xml
+37 −7		datm/cime_config/namelist_definition_datm.xml
+284 −7		datm/cime_config/stream_definition_datm.xml
+0 −40		datm/datm_datamode_cfsr_mod.F90
+0 −38		datm/datm_datamode_clmncep_mod.F90
+0 −39		datm/datm_datamode_core2_mod.F90
+2 −41		datm/datm_datamode_cplhist_mod.F90
+2 −40		datm/datm_datamode_era5_mod.F90
+0 −39		datm/datm_datamode_gefs_mod.F90
+0 −39		datm/datm_datamode_jra_mod.F90
+0 −39		datm/datm_datamode_simple_mod.F90
+13 −3		dglc/cime_config/testdefs/testlist_dglc.xml
+7 −12		dglc/dglc_datamode_noevolve_mod.F90
+10 −6		dglc/glc_comp_nuopc.F90
+12 −9		dice/dice_datamode_ssmi_mod.F90
+12 −6		dice/ice_comp_nuopc.F90
+18 −9		dlnd/lnd_comp_nuopc.F90
+0 −39		docn/docn_datamode_copyall_mod.F90
+0 −39		docn/docn_datamode_cplhist_mod.F90
+0 −44		docn/docn_datamode_iaf_mod.F90
+0 −43		docn/docn_datamode_multilev_dom_mod.F90
+0 −43		docn/docn_datamode_multilev_mod.F90
+10 −9		docn/docn_datamode_som_mod.F90
+33 −33		docn/ocn_comp_nuopc.F90
+4 −2		drof/cime_config/config_component.xml
+2 −1		drof/cime_config/namelist_definition_drof.xml
+32 −0		drof/cime_config/stream_definition_drof.xml
+16 −9		drof/rof_comp_nuopc.F90
+13 −19		dshr/dshr_mod.F90
+16 −8		dwav/wav_comp_nuopc.F90
+109 −13		share/nuopc_shr_methods.F90
+1 −1		.github/workflows/extbuild.yml
+2 −1		.github/workflows/srt.yml
+14 −16		cesm/driver/esm_time_mod.F90
+3 −2		cime_config/buildnml
+27 −0		cime_config/config_component.xml
+14 −18		cime_config/namelist_definition_drv.xml
+10 −0		cime_config/testdefs/testlist_drv.xml
+1 −0		cime_config/testdefs/testmods_dirs/drv/aoflux_ogrid/user_nl_cpl
+3 −3		mediator/esmFldsExchange_cesm_mod.F90
+140 −5		mediator/med.F90
+0 −2		mediator/med_diag_mod.F90
+10 −5		mediator/med_internalstate_mod.F90
+57 −74		mediator/med_map_mod.F90
+7 −5		mediator/med_phases_aofluxes_mod.F90
+7 −8		mediator/med_phases_ocnalb_mod.F90
+23 −29		mediator/med_phases_restart_mod.F90
+73 −100		src/nuopc_shr_methods.F90
+2 −1		src/shr_reprosum_mod.F90