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Control kernels and modularity #200

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Control kernels and modularity #200

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Commits on Dec 15, 2018

  1. add optional dynamic_values argument to Landscape

    @bcdaniels
    bcdaniels committed Dec 15, 2018
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Commits on Dec 18, 2018

  1. change dynamic_values to dynamic_pin; use limited_state_space

    @bcdaniels
    bcdaniels committed Dec 18, 2018
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Commits on Dec 21, 2018

  1. update pinning and reverse the order of attractors from neet

    @bcdaniels
    bcdaniels committed Dec 21, 2018
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Commits on Mar 28, 2019

  1. minor fix to test_boolean.py

    @bcdaniels
    bcdaniels committed Mar 28, 2019
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  2. add RBN for generating standard random boolean networks (thanks Enrico)

    @bcdaniels
    bcdaniels committed Mar 28, 2019
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  3. simple test for RBN generation

    @bcdaniels
    bcdaniels committed Mar 28, 2019
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  4. Merge branch 'RBN' into modularity

    @bcdaniels
    bcdaniels committed Mar 28, 2019
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Commits on May 1, 2020

  1. Merge branch 'master' into modularity (fixes encoding bug)

    @bcdaniels
    bcdaniels committed May 1, 2020
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  2. fix up a few other merge issues

    @bcdaniels
    bcdaniels committed May 1, 2020
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Commits on May 15, 2020

  1. first implementation of RBN_Kim

    @bcdaniels
    bcdaniels committed May 15, 2020
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Commits on Aug 13, 2020

  1. allow larger networks with dynamic_pin 

    np.int has max size 64 bits.  Change to np.object instead to
use python ints, which can increase in size for larger networks
    @bcdaniels
    bcdaniels committed Aug 13, 2020
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Commits on Nov 13, 2020

  1. Merge branch 'master' into ck-and-modularity 

    Quick and dirty merge for now.  Still need to incorporate changes to Landscape in the old synchronous.py (and stuff from randomnet.py if we want to include it)
    @bcdaniels
    bcdaniels committed Nov 13, 2020
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  2. code dump of modularity and control kernel functionality (not yet int… 

    …egrated)
    @bcdaniels
    bcdaniels committed Nov 13, 2020
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