Control kernels and modularity

[bcdaniels]

Still a work in progress.

Eventually this will merge in functionality to

1. compute attractors efficiently in modular Boolean networks and
2. compute control kernels in Boolean networks

There's also some leftover code for creating Random Boolean Networks that we might decide to include.

Work still to do:

• Merge in edits to Landscape structure (appearing in the old synchronous.py file) having to do with "dynamic pinning"
• Update modularity and control kernel code to use new Landscape interface
• Split boolean.modularity into separate boolean.modularity and boolean.controlkernel submodules if it makes sense
• Beef up unit tests (we have some written in test/test_modularity.py)
• Otherwise clean up the code

[dglmoore]

@bcdaniels You have a knack for submitting milestone pull requests: #100

[bcdaniels]

Hm... I’ll have to come up with something good for 300!

…

On Nov 12, 2020, 5:53 PM -0700, Douglas G. Moore ***@***.***>, wrote: @bcdaniels You have a knack for submitting milestone pull requests: #100 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or unsubscribe.